6MSY

Deposited: 2018-10-18 Released: 2018-11-21
Deposition Author(s): Calarese, D.A., Stanfield, R.L., Wilson, I.A.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

Currently 6MSY does not have a validation slider image.

This is version 2.1 of the entry. See complete history.

Macromolecule Content

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab 2G12, light chain	A [auth L]	213	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for P0DOX7 (Homo sapiens) Explore P0DOX7 Go to UniProtKB: P0DOX7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0DOX7
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab 2g12, heavy chain	B [auth H]	225	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for P0DOX5 (Homo sapiens) Explore P0DOX5 Go to UniProtKB: P0DOX5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0DOX5
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose	C [auth A]	4		N/A	Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
Glycosylation Resources
GlyTouCan: G94983ZY GlyCosmos: G94983ZY GlyGen: G94983ZY

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain H MOL2 format, chain H	H	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain H Interactions & Density Focus chain H
UNX Query on UNX Download Ideal Coordinates CCD File SDF format, chain D [auth L] SDF format, chain E [auth H] SDF format, chain F [auth H] SDF format, chain G [auth H] MOL2 format, chain D [auth L] MOL2 format, chain E [auth H] MOL2 format, chain F [auth H] MOL2 format, chain G [auth H]	D [auth L], E [auth H], F [auth H], G [auth H]	UNKNOWN ATOM OR ION X		Interactions Focus chain D [auth L] Focus chain E [auth H] Focus chain F [auth H] Focus chain G [auth H] Interactions & Density Focus chain D [auth L] Focus chain E [auth H] Focus chain F [auth H] Focus chain G [auth H]

Experimental Data & Validation

Unit Cell:

Software Package:

Currently 6MSY does not have a validation slider image.

Entry History & Funding Information

Deposition Author(s):

Calarese, D.A.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM46192

Version 1.0: 2018-11-21
Type: Initial release
Version 1.1: 2020-01-01
Changes: Author supporting evidence
Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary
Version 2.1: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary