Download MendeleyCrystal structure of carbon-nitrogen hydrolase from Helicobacter pylori G27
Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
6MG6
Crystal structure of carbon-nitrogen hydrolase from Helicobacter pylori G27
- PDB DOI: https://doi.org/10.2210/pdb6MG6/pdb
- Classification: HYDROLASE
- Organism(s): Helicobacter pylori G27
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2018-09-13 Released: 2018-09-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.208
- R-Value Work: 0.168
- R-Value Observed: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Carbon-nitrogen hydrolase | 300 | Helicobacter pylori G27 | Mutation(s): 0 Gene Names: HPG27_713 |  | |
UniProt | |||||
Find proteins for B5Z7B9 (Helicobacter pylori (strain G27)) Explore B5Z7B9 Go to UniProtKB: B5Z7B9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B5Z7B9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.208
- R-Value Work: 0.168
- R-Value Observed: 0.169
- Space Group: P 21 21 2
- Diffraction Data: https://doi.org/10.18430/m36mg6
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 137.58 | α = 90 |
| b = 91.38 | β = 90 |
| c = 95.04 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
| PARROT | phasing |
| Coot | model building |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2018-09-26 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2018-09-26
Type: Initial release - Version 1.1: 2024-03-13
Changes: Data collection, Database references, Refinement description - Version 1.2: 2024-04-03
Changes: Refinement description
