6MFI

MIM-2 Metallo-Beta-Lactamase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.309 
  • R-Value Work: 0.260 
  • R-Value Observed: 0.264 

wwPDB Validation   3D Report Full Report

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This is version 1.2 of the entry. See complete history


Literature

characterization of the B3 MBLs MIM-1 and MIM-2 from environmental microorganisms.

Selleck, C.Clayton, D.Gahan, L.R.Mitic, N.McGeary, R.P.Pedroso, M.M.Guddat, L.W.Schenk, G.Monteiro Pedroso, M.

(2017) Chemistry 23: 4778-4781

  • DOI: https://doi.org/10.1002/chem.201700866
  • Primary Citation of Related Structures:  
    5UQ6, 6MFI

  • PubMed Abstract: 

    Metallohydrolases are a vast family of enzymes that play crucial roles in numerous metabolic pathways. Several members have emerged as targets for chemotherapeutics. Knowledge about their reaction mechanisms and associated transition states greatly aids the design of potent and highly specific drug leads. By using a high-resolution crystal structure, we have probed the trajectory of the reaction catalyzed by purple acid phosphatase, an enzyme essential for the integrity of bone structure. In particular, the transition state is visualized, thus providing detailed structural information that may be exploited in the design of specific inhibitors for the development of new anti-osteoporotic chemotherapeutics.


  • Organizational Affiliation

    School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, Queensland, 4072, Australia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Metallo-beta-lactamase295Simiduia agarivorans SA1 = DSM 21679Mutation(s): 0 
Gene Names: M5M_14960
UniProt
Find proteins for K4KM71 (Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1))
Explore K4KM71 
Go to UniProtKB:  K4KM71
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupK4KM71
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.309 
  • R-Value Work: 0.260 
  • R-Value Observed: 0.264 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.672α = 90
b = 69.527β = 90
c = 76.541γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXphasing
Blu-Icedata collection
XDSdata scaling
HKL-2000data reduction

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Health and Medical Research Council (NHMRC, Australia)AustraliaAPP1084778
Australian Research Council (ARC)AustraliaFT120100694
Australian Research Council (ARC)AustraliaFT120100421
Other privateIrelandSFI-PIYRA
National Science Foundation (NSF, United States)United StatesCHE1303852
National Science Foundation (NSF, United States)United StatesCHE0820965

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-13
    Type: Initial release
  • Version 1.1: 2019-11-27
    Changes: Author supporting evidence
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references, Derived calculations, Refinement description