6LP1

Crystal structure of acetate:succinate CoA transferase (ASCT) from Trypanosoma brucei.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.228 

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Literature

The ASCT/SCS cycle fuels mitochondrial ATP and acetate production in Trypanosoma brucei.

Mochizuki, K.Inaoka, D.K.Mazet, M.Shiba, T.Fukuda, K.Kurasawa, H.Millerioux, Y.Boshart, M.Balogun, E.O.Harada, S.Hirayama, K.Bringaud, F.Kita, K.

(2020) Biochim Biophys Acta Bioenerg 1861: 148283-148283

  • DOI: https://doi.org/10.1016/j.bbabio.2020.148283
  • Primary Citation of Related Structures:  
    6LP1

  • PubMed Abstract: 

    Acetate:succinate CoA transferase (ASCT) is a mitochondrial enzyme that catalyzes the production of acetate and succinyl-CoA, which is coupled to ATP production with succinyl-CoA synthetase (SCS) in a process called the ASCT/SCS cycle. This cycle has been studied in Trypanosoma brucei (T. brucei), a pathogen of African sleeping sickness, and is involved in (i) ATP and (ii) acetate production and proceeds independent of oxygen and an electrochemical gradient. Interestingly, knockout of ASCT in procyclic form (PCF) of T. brucei cause oligomycin A-hypersensitivity phenotype indicating that ASCT/SCS cycle complements the deficiency of ATP synthase activity. In bloodstream form (BSF) of T. brucei, ATP synthase works in reverse to maintain the electrochemical gradient by hydrolyzing ATP. However, no information has been available on the source of ATP, although ASCT/SCS cycle could be a potential candidate. Regarding mitochondrial acetate production, which is essential for fatty acid biosynthesis and growth of T. brucei, ASCT or acetyl-CoA hydrolase (ACH) are known to be its source. Despite the importance of this cycle, direct evidence of its function is lacking, and there are no comprehensive biochemical or structural biology studies reported so far. Here, we show that in vitro-reconstituted ASCT/SCS cycle is highly specific towards acetyl-CoA and has a higher k cat than that of yeast and bacterial ATP synthases. Our results provide the first biochemical basis for (i) rescue of ATP synthase-deficient phenotype by ASCT/SCS cycle in PCF and (ii) a potential source of ATP for the reverse reaction of ATP synthase in BSF.


  • Organizational Affiliation

    Department of Immunogenetics, Institute of Tropical Medicine (NEKKEN), Nagasaki University, Japan; Graduate School of Biomedical Sciences, Nagasaki University, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Succinyl-CoA:3-ketoacid-coenzyme A transferase
A, B, C, D
483Trypanosoma bruceiMutation(s): 0 
EC: 2.8.3.5
UniProt
Find proteins for Q386P1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q386P1 
Go to UniProtKB:  Q386P1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ386P1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.228 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 59.886α = 90
b = 164.635β = 90
c = 187.573γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Agency for Medical Research and Development (AMED)JapanJP18fm0208027
Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan16K19114, 23570131 , 26234567
Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan16811362 , 19H03436 , 19K07523

Revision History  (Full details and data files)

  • Version 1.0: 2020-10-07
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Database references, Refinement description