6LD7

Native Structure of cystathionine gamma synthase (XometB) from Xanthomonas oryzae pv. oryzae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.163 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Native Structure of cystathionine gamma synthase (XometB) from Xanthomonas oryzae pv. oryzae

Ngo, H.P.T.Nguyen, T.D.Q.Kang, L.W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cystathionine gamma-synthase
A, B, C, D
408Xanthomonas oryzae pv. oryzae KACC 10331Mutation(s): 1 
Gene Names: metBXOO1818
UniProt
Find proteins for Q5H1U9 (Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85))
Explore Q5H1U9 
Go to UniProtKB:  Q5H1U9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5H1U9
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.163 
  • Space Group: I 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 165.424α = 90
b = 165.424β = 90
c = 241.735γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHASESphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-25
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Refinement description