Download MendeleyCryo-EM structure of giant freshwater prawn Macrobrachium rosenbergii extra small virus (XSV) VLP
Chang, W.H., Wang, C.H., Lin, H.H., Lin, S.Y., Chong, S.C., Wu, Y.Y.To be published.
6JJA
Cryo-EM structure of giant freshwater prawn Macrobrachium rosenbergii extra small virus (XSV) VLP
- PDB DOI: https://doi.org/10.2210/pdb6JJA/pdb
- EM Map EMD-9705: EMDB EMDataResource
- Classification: VIRUS
- Organism(s): Extra small virus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-02-25 Released: 2019-07-17
- Funding Organization(s): Ministry of Science and Technology (Taiwan)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.91 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nucleocapsid protein CP17 | 174 | Extra small virus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q15BP7 (Extra small virus) Explore Q15BP7 Go to UniProtKB: Q15BP7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q15BP7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | B [auth A], C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.91 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | RELION | 2.0 |
| MODEL REFINEMENT | PHENIX | 3374 |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-07-17 Deposition Author(s): Chang, W.H., Wang, C.H., Lin, H.H., Lin, S.Y., Chong, S.C., Wu, Y.Y.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Ministry of Science and Technology (Taiwan) | Taiwan | MOST 103-2321-B-001-048 |
| Ministry of Science and Technology (Taiwan) | Taiwan | MOST 104-2321-B-001-019 |
| Ministry of Science and Technology (Taiwan) | Taiwan | MOST 105-2321-B-001-009 |
| Ministry of Science and Technology (Taiwan) | Taiwan | MOST 106-0210-01-15-02 |
| Ministry of Science and Technology (Taiwan) | Taiwan | MOST 106-0210-01-15-04 |
| Ministry of Science and Technology (Taiwan) | Taiwan | MOST 107-0210-01-19-01 |
| Ministry of Science and Technology (Taiwan) | Taiwan | MOST 107-0210-01-19-02 |
Revision History (Full details and data files)
- Version 1.0: 2019-07-17
Type: Initial release - Version 1.1: 2024-03-27
Changes: Data collection, Database references, Derived calculations
