6IY4

Crystal structure of a psychrophilic marine protease MP inhibitor

PDB DOI: https://doi.org/10.2210/pdb6IY4/pdb

Classification: HYDROLASE INHIBITOR
Organism(s): Flavobacterium sp. YS-80-122
Mutation(s): No

Deposited: 2018-12-12 Released: 2019-12-18
Deposition Author(s): Hao, J.H., Zhang, L.H.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.59 Å
R-Value Free: 0.218
R-Value Work: 0.210
R-Value Observed: 0.210

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a psychrophilic marine protease MP inhibitor

Hao, J.H.

To be published.

Macromolecule Content

Total Structure Weight: 10.1 kDa
Atom Count: 722
Modelled Residue Count: 93
Deposited Residue Count: 93
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LupI	A [auth I]	93	Flavobacterium sp. YS-80-122	Mutation(s): 0
UniProt
Find proteins for G3MEU6 (Flavobacterium sp. YS-80-122) Explore G3MEU6 Go to UniProtKB: G3MEU6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	G3MEU6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.59 Å
R-Value Free: 0.218
R-Value Work: 0.210
R-Value Observed: 0.210
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.036	α = 90
b = 39.281	β = 90
c = 62.571	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-12-18

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	41376175

Revision History (Full details and data files)

Version 1.0: 2019-12-18
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.