Download MendeleyArchaeal Smc-based condensin lacking kite subunits
Jeon, J.-H., Lee, H.-S., Shin, H.-C., Kwak, M.-J., Kim, Y.-K., Gruber, S., Oh, B.-H.(2020) IUCrJ
6IVH
Crystal structure of the N-terminal domain of ScpA derived from Thermococcus onnurineus
- PDB DOI: https://doi.org/10.2210/pdb6IVH/pdb
- Classification: CELL CYCLE
- Organism(s): Thermococcus onnurineus NA1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-12-04 Released: 2020-01-22
- Funding Organization(s): National Research Foundation (Korea)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.259
- R-Value Work: 0.239
- R-Value Observed: 0.242
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Segregation and condensation protein A | 126 | Thermococcus onnurineus NA1 | Mutation(s): 0 Gene Names: TON_1071 |  | |
UniProt | |||||
Find proteins for B6YWU6 (Thermococcus onnurineus (strain NA1)) Explore B6YWU6 Go to UniProtKB: B6YWU6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B6YWU6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.259
- R-Value Work: 0.239
- R-Value Observed: 0.242
- Space Group: P 61
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.984 | α = 90 |
| b = 76.984 | β = 90 |
| c = 39.934 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SOLVE | phasing |
| RESOLVE | model building |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-01-22 Deposition Author(s): Jeon, J.-H., Shin, H.-C., Oh, B.-H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Research Foundation (Korea) | Korea, Republic Of | NRF-2018R1A2B3004764 |
Revision History (Full details and data files)
- Version 1.0: 2020-01-22
Type: Initial release
