Download MendeleyThe crystal structure of type II Dehydroquinase from Butyrivibrio crossotus DSM 2876
Lapthorn, A.J., Ner, L., Roszak, A.W.To be published.
6HS9
The crystal structure of type II Dehydroquinase from Butyrivibrio crossotus DSM 2876
- PDB DOI: https://doi.org/10.2210/pdb6HS9/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Butyrivibrio crossotus DSM 2876
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-09-29 Released: 2019-10-23
- Funding Organization(s): Engineering and Physical Sciences Research Council
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.05 Å
- R-Value Free: 0.134
- R-Value Work: 0.113
- R-Value Observed: 0.114
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-dehydroquinate dehydratase | 145 | Butyrivibrio crossotus DSM 2876 | Mutation(s): 0 Gene Names: aroQ, BUTYVIB_01550 EC: 4.2.1.10 |  | |
UniProt | |||||
Find proteins for D4S0D1 (Butyrivibrio crossotus DSM 2876) Explore D4S0D1 Go to UniProtKB: D4S0D1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D4S0D1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 3DS Query on 3DS | B [auth A] | (4S,5R)-4,5-dihydroxy-3-oxocyclohex-1-ene-1-carboxylic acid C7 H8 O5 SLWWJZMPHJJOPH-PHDIDXHHSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.05 Å
- R-Value Free: 0.134
- R-Value Work: 0.113
- R-Value Observed: 0.114
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.55 | α = 90 |
| b = 79.55 | β = 90 |
| c = 72.28 | γ = 120 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-10-23 Deposition Author(s): Lapthorn, A.J., Roszak, A.W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Engineering and Physical Sciences Research Council | United Kingdom | EP/P00086X/1 |
Revision History (Full details and data files)
- Version 1.0: 2019-10-23
Type: Initial release - Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description
