6HS7

Type VI membrane complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

In situ and high-resolution cryo-EM structure of a bacterial type VI secretion system membrane complex.

Rapisarda, C.Cherrak, Y.Kooger, R.Schmidt, V.Pellarin, R.Logger, L.Cascales, E.Pilhofer, M.Durand, E.Fronzes, R.

(2019) EMBO J 

  • DOI: https://doi.org/10.15252/embj.2018100886
  • Primary Citation of Related Structures:  
    6HS7

  • PubMed Abstract: 

    Bacteria have evolved macromolecular machineries that secrete effectors and toxins to survive and thrive in diverse environments. The type VI secretion system (T6SS) is a contractile machine that is related to Myoviridae phages. It is composed of a phage tail-like structure inserted in the bacterial cell envelope by a membrane complex (MC) comprising the TssJ, TssL and TssM proteins. We previously reported the low-resolution negative-stain electron microscopy structure of the enteroaggregative Escherichia coli MC and proposed a rotational 5-fold symmetry with a TssJ:TssL:TssM stoichiometry of 2:2:2. Here, cryo-electron tomography analyses of the T6SS MC confirm the 5-fold symmetry in situ and identify the regions of the structure that insert into the bacterial membranes. A high-resolution model obtained by single-particle cryo-electron microscopy highlights new features: five additional copies of TssJ, yielding a TssJ:TssL:TssM stoichiometry of 3:2:2, an 11-residue loop in TssM, protruding inside the lumen of the MC and constituting a functionally important periplasmic gate, and hinge regions. Based on these data, we propose an updated model on MC structure and dynamics during T6SS assembly and function.


  • Organizational Affiliation

    CNRS UMR 5234 Microbiologie Fondamentale et Pathogénicité, Bordeaux, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ImcF-like family protein1,129Escherichia coliMutation(s): 0 
Gene Names: EC90111_2427
Entity Groups  
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Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Type VI secretion system protein VasD
F, G, H, I, J
F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
186Escherichia coliMutation(s): 0 
Gene Names: vasDECDEC6A_3651
UniProt
Find proteins for A0A377LAC1 (Escherichia coli)
Explore A0A377LAC1 
Go to UniProtKB:  A0A377LAC1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A377LAC1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
France--

Revision History  (Full details and data files)

  • Version 1.0: 2019-03-27
    Type: Initial release