6GVW

Crystal structure of the BRCA1-A complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.75 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.229 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural Basis of BRCC36 Function in DNA Repair and Immune Regulation.

Rabl, J.Bunker, R.D.Schenk, A.D.Cavadini, S.Gill, M.E.Abdulrahman, W.Andres-Pons, A.Luijsterburg, M.S.Ibrahim, A.F.M.Branigan, E.Aguirre, J.D.Marceau, A.H.Guerillon, C.Bouwmeester, T.Hassiepen, U.Peters, A.H.F.M.Renatus, M.Gelman, L.Rubin, S.M.Mailand, N.van Attikum, H.Hay, R.T.Thoma, N.H.

(2019) Mol Cell 75: 483-497.e9

  • DOI: https://doi.org/10.1016/j.molcel.2019.06.002
  • Primary Citation of Related Structures:  
    6GVW, 6H3C

  • PubMed Abstract: 

    In mammals, ∼100 deubiquitinases act on ∼20,000 intracellular ubiquitination sites. Deubiquitinases are commonly regarded as constitutively active, with limited regulatory and targeting capacity. The BRCA1-A and BRISC complexes serve in DNA double-strand break repair and immune signaling and contain the lysine-63 linkage-specific BRCC36 subunit that is functionalized by scaffold subunits ABRAXAS and ABRO1, respectively. The molecular basis underlying BRCA1-A and BRISC function is currently unknown. Here we show that in the BRCA1-A complex structure, ABRAXAS integrates the DNA repair protein RAP80 and provides a high-affinity binding site that sequesters the tumor suppressor BRCA1 away from the break site. In the BRISC structure, ABRO1 binds SHMT2α, a metabolic enzyme enabling cancer growth in hypoxic environments, which we find prevents BRCC36 from binding and cleaving ubiquitin chains. Our work explains modularity in the BRCC36 DUB family, with different adaptor subunits conferring diversified targeting and regulatory functions.


  • Organizational Affiliation

    Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland; University of Basel, Petersplatz 10, 4003 Basel, Switzerland.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
BRCA1-A complex subunit Abraxas 1
A, F
411Mus musculusMutation(s): 0 
Gene Names: Abraxas1Abra1Ccdc98Fam175a
UniProt
Find proteins for Q8BPZ8 (Mus musculus)
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Go to UniProtKB:  Q8BPZ8
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UniProt GroupQ8BPZ8
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Lys-63-specific deubiquitinase BRCC36
B, G
295Mus musculusMutation(s): 0 
Gene Names: Brcc3Brcc36C6.1a
EC: 3.4.19
UniProt & NIH Common Fund Data Resources
Find proteins for P46737 (Mus musculus)
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IMPC:  MGI:2389572
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UniProt GroupP46737
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
BRISC and BRCA1-A complex member 2
C, H
387Mus musculusMutation(s): 0 
Gene Names: Babam2Bre
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IMPC:  MGI:1333875
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UniProt GroupQ8K3W0
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
BRISC and BRCA1-A complex member 1
D, I
337Mus musculusMutation(s): 0 
Gene Names: Babam1Merit40Nba1
UniProt & NIH Common Fund Data Resources
Find proteins for Q3UI43 (Mus musculus)
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IMPC:  MGI:1915501
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
BRCA1-A complex subunit RAP80
E, J
64Mus musculusMutation(s): 0 
Gene Names: Uimc1Rap80Rip110Rxrip110
UniProt
Find proteins for Q5U5Q9 (Mus musculus)
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UniProt GroupQ5U5Q9
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.75 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.227 
  • R-Value Observed: 0.229 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.096α = 90
b = 122.645β = 90
c = 431.325γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-07-10
    Type: Initial release
  • Version 1.1: 2019-08-21
    Changes: Data collection, Database references