6G96

Crystal structure of TacT3 (tRNA acetylating toxin) from Salmonella


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.210 

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Activity of acetyltransferase toxins involved in Salmonella persister formation during macrophage infection.

Rycroft, J.A.Gollan, B.Grabe, G.J.Hall, A.Cheverton, A.M.Larrouy-Maumus, G.Hare, S.A.Helaine, S.

(2018) Nat Commun 9: 1993-1993

  • DOI: https://doi.org/10.1038/s41467-018-04472-6
  • Primary Citation of Related Structures:  
    6G96

  • PubMed Abstract: 

    Non-typhoidal Salmonella strains are responsible for invasive infections associated with high mortality and recurrence in sub-Saharan Africa, and there is strong evidence for clonal relapse following antibiotic treatment. Persisters are non-growing bacteria that are thought to be responsible for the recalcitrance of many infections to antibiotics. Toxin-antitoxin systems are stress-responsive elements that are important for Salmonella persister formation, specifically during infection. Here, we report the analysis of persister formation of clinical invasive strains of Salmonella Typhimurium and Enteritidis in human primary macrophages. We show that all the invasive clinical isolates of both serovars that we tested produce high levels of persisters following internalization by human macrophages. Our genome comparison reveals that S. Enteritidis and S. Typhimurium strains contain three acetyltransferase toxins that we characterize structurally and functionally. We show that all induce the persister state by inhibiting translation through acetylation of aminoacyl-tRNAs. However, they differ in their potency and target partially different subsets of aminoacyl-tRNAs, potentially accounting for their non-redundant effect.


  • Organizational Affiliation

    Section of Microbiology, Medical Research Council Centre for Molecular Bacteriology and Infection, Imperial College London, Armstrong Road, London, SW7 2AZ, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
AcetyltransferaseA [auth B],
B [auth A]
176Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 1 
Gene Names: CU490_09610CX046_09695DD95_05355
UniProt
Find proteins for Q7CPW9 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore Q7CPW9 
Go to UniProtKB:  Q7CPW9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7CPW9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.786α = 90
b = 71.202β = 90
c = 86.313γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
autoPROCdata scaling
PHASERphasing
Cootmodel building
autoPROCdata reduction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2018-05-16
    Type: Initial release
  • Version 1.1: 2018-05-30
    Changes: Data collection, Database references
  • Version 1.2: 2019-11-06
    Changes: Data collection, Refinement description
  • Version 1.3: 2024-01-17
    Changes: Data collection, Database references, Refinement description