Download MendeleyStructure of Trypanosoma brucei type B ribose 5-phosphate isomerase (TbRpiB)
Ronin, C., Ciesielski, F., Ciapetti, P.To be published.
6FXS
Structure of Trypanosoma brucei type B ribose 5-phosphate isomerase
- PDB DOI: https://doi.org/10.2210/pdb6FXS/pdb
- Classification: ISOMERASE
- Organism(s): Trypanosoma brucei brucei TREU927
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-03-09 Released: 2019-05-22
- Funding Organization(s): European Communitys Seventh Framework Programme
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.198
- R-Value Work: 0.164
- R-Value Observed: 0.166
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribose 5-phosphate isomerase, putative | 175 | Trypanosoma brucei brucei TREU927 | Mutation(s): 0 Gene Names: Tb11.01.0700 EC: 5.3.1.6 |  | |
UniProt | |||||
Find proteins for Q384D1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1)) Explore Q384D1 Go to UniProtKB: Q384D1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q384D1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribose 5-phosphate isomerase, putative | 175 | Trypanosoma brucei brucei TREU927 | Mutation(s): 0 Gene Names: Tb11.01.0700 EC: 5.3.1.6 |  | |
UniProt | |||||
Find proteins for Q384D1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1)) Explore Q384D1 Go to UniProtKB: Q384D1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q384D1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.198
- R-Value Work: 0.164
- R-Value Observed: 0.166
- Space Group: P 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 97.8 | α = 90 |
| b = 97.8 | β = 90 |
| c = 84.18 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-05-22 Deposition Author(s): Ronin, C., Ciesielski, F., Ciapetti, P.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Communitys Seventh Framework Programme | France | 602773 |
Revision History (Full details and data files)
- Version 1.0: 2019-05-22
Type: Initial release - Version 1.1: 2019-06-12
Changes: Data collection, Database references, Structure summary - Version 1.2: 2024-01-17
Changes: Author supporting evidence, Data collection, Database references, Refinement description
