6FG7
Crystal structure of the BIR2 ectodomain from Arabidopsis thaliana.
- PDB DOI: https://doi.org/10.2210/pdb6FG7/pdb
- Classification: PROTEIN BINDING
- Organism(s): Arabidopsis thaliana
- Expression System: Trichoplusia ni
- Mutation(s): No 
- Deposited: 2018-01-10 Released: 2018-01-24 
- Funding Organization(s): Swiss National Science Foundation
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.233 
- R-Value Work: 0.214 
- R-Value Observed: 0.215 
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Inactive LRR receptor-like serine/threonine-protein kinase BIR2 | 250 | Arabidopsis thaliana | Mutation(s): 0  Gene Names: BIR2, At3g28450, MFJ20.14 | ||
UniProt | |||||
Find proteins for Q9LSI9 (Arabidopsis thaliana) Explore Q9LSI9  Go to UniProtKB:  Q9LSI9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9LSI9 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | D [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
MLI Query on MLI | E [auth B] | MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.233 
- R-Value Work: 0.214 
- R-Value Observed: 0.215 
- Space Group: P 64 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 153.77 | α = 90 |
b = 153.77 | β = 90 |
c = 110.055 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |
SHARP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-01-24  Deposition Author(s): Hothorn, M., Hohmann, U.
Funding Organization | Location | Grant Number |
---|---|---|
Swiss National Science Foundation | Switzerland | 31003A_176237 |
Revision History (Full details and data files)
- Version 1.0: 2018-01-24
Type: Initial release - Version 1.1: 2018-05-16
Changes: Data collection, Database references - Version 1.2: 2018-09-05
Changes: Data collection, Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary