6E3C

NMR Solution Structure of the Monomeric Form of the Phage L Decoration Protein


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 250 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The phage L capsid decoration protein has a novel OB-fold and an unusual capsid binding strategy.

Newcomer, R.L.Schrad, J.R.Gilcrease, E.B.Casjens, S.R.Feig, M.Teschke, C.M.Alexandrescu, A.T.Parent, K.N.

(2019) Elife 8

  • DOI: https://doi.org/10.7554/eLife.45345
  • Primary Citation of Related Structures:  
    6E3C

  • PubMed Abstract: 

    The major coat proteins of dsDNA tailed phages (order Caudovirales ) and herpesviruses form capsids by a mechanism that includes active packaging of the dsDNA genome into a precursor procapsid, followed by expansion and stabilization of the capsid. These viruses have evolved diverse strategies to fortify their capsids, such as non-covalent binding of auxiliary 'decoration' (Dec) proteins. The Dec protein from the P22-like phage L has a highly unusual binding strategy that distinguishes between nearly identical three-fold and quasi-three-fold sites of the icosahedral capsid. Cryo-electron microscopy and three-dimensional image reconstruction were employed to determine the structure of native phage L particles. NMR was used to determine the structure/dynamics of Dec in solution. The NMR structure and the cryo-EM density envelope were combined to build a model of the capsid-bound Dec trimer. Key regions that modulate the binding interface were verified by site-directed mutagenesis.


  • Organizational Affiliation

    Department of Molecular and Cell Biology, University of Connecticut, Storrs, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dec proteinA [auth C]137Enterobacteria phage LMutation(s): 0 
Gene Names: dec
UniProt
Find proteins for Q5C838 (Enterobacteria phage L)
Explore Q5C838 
Go to UniProtKB:  Q5C838
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5C838
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 250 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM076661
Other privateUnited StatesResearch Excellence Program

Revision History  (Full details and data files)

  • Version 1.0: 2019-04-17
    Type: Initial release
  • Version 1.1: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.2: 2023-06-14
    Changes: Database references, Other