6CKP

Crystal structure of a thioredoxin domain 2 from Brucella melitensis at 1.15 Angstrom resolution

PDB DOI: https://doi.org/10.2210/pdb6CKP/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Brucella melitensis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-02-28 Released: 2018-04-04
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.15 Å
R-Value Free: 0.161
R-Value Work: 0.141
R-Value Observed: 0.142

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a thioredoxin domain 2 from Brucella melitensis at 1.15 Angstrom resolution

Mayclin, S.J., Dranow, D.M., Buchko, G.W., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 13.72 kDa
Atom Count: 1,086
Modelled Residue Count: 119
Deposited Residue Count: 128
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioredoxin	A	128	Brucella melitensis	Mutation(s): 0 Gene Names: BK187_10725
UniProt
Find proteins for Q2YQX0 (Brucella abortus (strain 2308)) Explore Q2YQX0 Go to UniProtKB: Q2YQX0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q2YQX0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.15 Å
R-Value Free: 0.161
R-Value Work: 0.141
R-Value Observed: 0.142
Space Group: P 4₁
Diffraction Data: https://doi.org/10.18430/M36CKP

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.24	α = 90
b = 40.24	β = 90
c = 63.82	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing
PHENIX	refinement
Coot	model building

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-04-04

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2018-04-04
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.