6CGO

Molecular basis for condensation domain-mediated chain release from the enacyloxin polyketide synthase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.181 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Structural basis for chain release from the enacyloxin polyketide synthase.

Kosol, S.Gallo, A.Griffiths, D.Valentic, T.R.Masschelein, J.Jenner, M.de Los Santos, E.L.C.Manzi, L.Sydor, P.K.Rea, D.Zhou, S.Fulop, V.Oldham, N.J.Tsai, S.C.Challis, G.L.Lewandowski, J.R.

(2019) Nat Chem 11: 913-923

  • DOI: https://doi.org/10.1038/s41557-019-0335-5
  • Primary Citation of Related Structures:  
    6CGO

  • PubMed Abstract: 

    Modular polyketide synthases and non-ribosomal peptide synthetases are molecular assembly lines that consist of several multienzyme subunits that undergo dynamic self-assembly to form a functional megacomplex. N- and C-terminal docking domains are usually responsible for mediating the interactions between subunits. Here we show that communication between two non-ribosomal peptide synthetase subunits responsible for chain release from the enacyloxin polyketide synthase, which assembles an antibiotic with promising activity against Acinetobacter baumannii, is mediated by an intrinsically disordered short linear motif and a β-hairpin docking domain. The structures, interactions and dynamics of these subunits were characterized using several complementary biophysical techniques to provide extensive insights into binding and catalysis. Bioinformatics analyses reveal that short linear motif/β-hairpin docking domain pairs mediate subunit interactions in numerous non-ribosomal peptide and hybrid polyketide-non-ribosomal peptide synthetases, including those responsible for assembling several important drugs. Short linear motifs and β-hairpin docking domains from heterologous systems are shown to interact productively, highlighting the potential of such interfaces as tools for biosynthetic engineering.


  • Organizational Affiliation

    Department of Chemistry, University of Warwick, Coventry, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Condensation domain protein
A, B
545Burkholderia ambifaria AMMDMutation(s): 0 
Gene Names: Bamb_5915
UniProt
Find proteins for Q0B313 (Burkholderia ambifaria (strain ATCC BAA-244 / AMMD))
Explore Q0B313 
Go to UniProtKB:  Q0B313
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ0B313
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.181 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 103.63α = 90
b = 58.77β = 104.96
c = 107γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM100305
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM076330
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/L023342/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/L022761/1
European Research Council (ERC)European Union639907

Revision History  (Full details and data files)

  • Version 1.0: 2019-02-27
    Type: Initial release
  • Version 1.1: 2019-04-10
    Changes: Author supporting evidence, Data collection
  • Version 1.2: 2019-10-02
    Changes: Data collection, Database references
  • Version 1.3: 2019-10-09
    Changes: Data collection, Database references
  • Version 1.4: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.5: 2024-03-13
    Changes: Data collection, Database references