Download MendeleyStructural characterization of human peptidyl-arginine deiminase type III by X-ray crystallography
Rechiche, O., Lee, T.V., Lott, J.S.(2021) Acta Crystallogr F Struct Biol Commun 77: 334-340
6CE1
Crystal structure of Peptidyl Arginine Deiminase Type III (PADI3)
- PDB DOI: https://doi.org/10.2210/pdb6CE1/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-02-10 Released: 2019-02-13
- Funding Organization(s): New Zealand Wool Industry Research Limited
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.274
- R-Value Work: 0.234
- R-Value Observed: 0.236
wwPDB Validation 3D Report Full Report
This is version 2.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein-arginine deiminase type-3 | 686 | Homo sapiens | Mutation(s): 0 Gene Names: PADI3, PAD3, PDI3 EC: 3.5.3.15 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9ULW8 (Homo sapiens) Explore Q9ULW8 Go to UniProtKB: Q9ULW8 | |||||
PHAROS: Q9ULW8 GTEx: ENSG00000142619 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9ULW8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.274
- R-Value Work: 0.234
- R-Value Observed: 0.236
- Space Group: H 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 115.023 | α = 90 |
| b = 115.023 | β = 90 |
| c = 328.487 | γ = 120 |
| Software Name | Purpose |
|---|---|
| phenix.refine | refinement |
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHENIX | phasing |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-02-13 Deposition Author(s): Rechiche, O., Lee, T.V., Lott, J.S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| New Zealand Wool Industry Research Limited | New Zealand | A18223 |
Revision History (Full details and data files)
- Version 1.0: 2019-02-13
Type: Initial release - Version 2.0: 2021-05-19
Type: Coordinate replacement
Reason: Polymer geometry
Changes: Advisory, Atomic model, Data collection, Derived calculations, Refinement description, Source and taxonomy - Version 2.1: 2021-10-06
Changes: Database references - Version 2.2: 2021-10-13
Changes: Database references - Version 2.3: 2023-10-04
Changes: Data collection, Refinement description
