6BZB

Crystal Structure of Glucose-6-phosphate Isomerase from Elizabethkingia anophelis

PDB DOI: https://doi.org/10.2210/pdb6BZB/pdb

Classification: ISOMERASE
Organism(s): Elizabethkingia anophelis NUHP1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-12-22 Released: 2018-01-10
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.177
R-Value Work: 0.149
R-Value Observed: 0.149

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Glucose-6-phosphate Isomerase from Elizabethkingia anophelis

Dranow, D.M., Mayclin, S.J., Lorimer, D.D., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 125.97 kDa
Atom Count: 10,226
Modelled Residue Count: 1,093
Deposited Residue Count: 1,110
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glucose-6-phosphate isomerase	A, B	555	Elizabethkingia anophelis NUHP1	Mutation(s): 0 Gene Names: pgi, BD94_3890 EC: 5.3.1.9
UniProt
Find proteins for A0A077EQ93 (Elizabethkingia anophelis NUHP1) Explore A0A077EQ93 Go to UniProtKB: A0A077EQ93
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A077EQ93
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.177
R-Value Work: 0.149
R-Value Observed: 0.149
Space Group: P 2₁ 2₁ 2₁
Diffraction Data: https://doi.org/10.18430/M36BZB

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.95	α = 90
b = 104.75	β = 90
c = 152.65	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MoRDa	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-01-10

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2018-01-10
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.