6BLJ

Crystal structure of cytoplasmic Serine-tRNA ligase from Naegleria fowleri in complex with AMP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.158 
  • R-Value Observed: 0.159 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Crystal structure of cytoplasmic Serine-tRNA ligase from Neisseria fowlerii in complex with AMP

Abendroth, J.Lorimer, D.D.Edwards, T.E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Serine-tRNA ligase
A, B, C
485Naegleria fowleriMutation(s): 0 
Gene Names: Nfow_scaffold00184
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 168.19α = 90
b = 168.19β = 90
c = 111.5γ = 120
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
MoRDaphasing
Cootmodel building
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-12-20
    Type: Initial release
  • Version 2.0: 2018-01-10
    Changes: Atomic model, Derived calculations
  • Version 2.1: 2023-10-04
    Changes: Data collection, Database references, Refinement description