6BEV

Human Single Domain Sulfurtranferase TSTD1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.04 Å
  • R-Value Free: 0.144 
  • R-Value Work: 0.130 
  • R-Value Observed: 0.130 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Thiosulfate sulfurtransferase-like domain-containing 1 protein interacts with thioredoxin.

Libiad, M.Motl, N.Akey, D.L.Sakamoto, N.Fearon, E.R.Smith, J.L.Banerjee, R.

(2018) J Biol Chem 293: 2675-2686

  • DOI: https://doi.org/10.1074/jbc.RA117.000826
  • Primary Citation of Related Structures:  
    6BEV

  • PubMed Abstract: 

    Rhodanese domains are structural modules present in the sulfurtransferase superfamily. These domains can exist as single units, in tandem repeats, or fused to domains with other activities. Despite their prevalence across species, the specific physiological roles of most sulfurtransferases are not known. Mammalian rhodanese and mercaptopyruvate sulfurtransferase are perhaps the best-studied members of this protein superfamily and are involved in hydrogen sulfide metabolism. The relatively unstudied human thiosulfate sulfurtransferase-like domain-containing 1 (TSTD1) protein, a single-domain cytoplasmic sulfurtransferase, was also postulated to play a role in the sulfide oxidation pathway using thiosulfate to form glutathione persulfide, for subsequent processing in the mitochondrial matrix. Prior kinetic analysis of TSTD1 was performed at pH 9.2, raising questions about relevance and the proposed model for TSTD1 function. In this study, we report a 1.04 Å resolution crystal structure of human TSTD1, which displays an exposed active site that is distinct from that of rhodanese and mercaptopyruvate sulfurtransferase. Kinetic studies with a combination of sulfur donors and acceptors reveal that TSTD1 exhibits a low K m for thioredoxin as a sulfane sulfur acceptor and that it utilizes thiosulfate inefficiently as a sulfur donor. The active site exposure and its interaction with thioredoxin suggest that TSTD1 might play a role in sulfide-based signaling. The apical localization of TSTD1 in human colonic crypts, which interfaces with sulfide-releasing microbes, and the overexpression of TSTD1 in colon cancer provide potentially intriguing clues as to its role in sulfide metabolism.


  • Organizational Affiliation

    Department of Biological Chemistry, University of Michigan Medical Center, Ann Arbor, Michigan 48109.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1
A, B
135Homo sapiensMutation(s): 0 
Gene Names: TSTD1KAT
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NFU3 (Homo sapiens)
Explore Q8NFU3 
Go to UniProtKB:  Q8NFU3
PHAROS:  Q8NFU3
GTEx:  ENSG00000215845 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NFU3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.04 Å
  • R-Value Free: 0.144 
  • R-Value Work: 0.130 
  • R-Value Observed: 0.130 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 37.903α = 113.31
b = 40.246β = 90.2
c = 47.201γ = 117.5
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
SOLVEphasing
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM112455
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesT32GM008353

Revision History  (Full details and data files)

  • Version 1.0: 2018-01-24
    Type: Initial release
  • Version 1.1: 2018-01-31
    Changes: Database references
  • Version 1.2: 2018-02-14
    Changes: Author supporting evidence
  • Version 1.3: 2018-03-07
    Changes: Database references
  • Version 1.4: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.5: 2024-03-13
    Changes: Data collection, Database references