6B8H

Mosaic model of yeast mitochondrial ATP synthase monomer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Atomic model for the dimeric FO region of mitochondrial ATP synthase.

Guo, H.Bueler, S.A.Rubinstein, J.L.

(2017) Science 358: 936-940

  • DOI: https://doi.org/10.1126/science.aao4815
  • Primary Citation of Related Structures:  
    6B2Z, 6B8H

  • PubMed Abstract: 

    Mitochondrial adenosine triphosphate (ATP) synthase produces the majority of ATP in eukaryotic cells, and its dimerization is necessary to create the inner membrane folds, or cristae, characteristic of mitochondria. Proton translocation through the membrane-embedded F O region turns the rotor that drives ATP synthesis in the soluble F 1 region. Although crystal structures of the F 1 region have illustrated how this rotation leads to ATP synthesis, understanding how proton translocation produces the rotation has been impeded by the lack of an experimental atomic model for the F O region. Using cryo-electron microscopy, we determined the structure of the dimeric F O complex from Saccharomyces cerevisiae at a resolution of 3.6 angstroms. The structure clarifies how the protons travel through the complex, how the complex dimerizes, and how the dimers bend the membrane to produce cristae.


  • Organizational Affiliation

    Hospital for Sick Children Research Institute, Toronto, Ontario M5G 0A4, Canada.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit 9, mitochondrial76Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P61829 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP61829
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase protein 8K [auth A],
OA [auth V]
48Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P00856 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP00856
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit aL [auth a],
PA [auth p]
249Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P00854 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit 4, mitochondrialM [auth b],
QA [auth q]
209Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P05626 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit d, mitochondrialN [auth d],
RA [auth r]
173Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit e, mitochondrialO [auth e],
SA [auth s]
49Saccharomyces cerevisiae S288CMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit f, mitochondrialP [auth f],
TA [auth t]
95Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
AATP synthase subunit gQ [auth g],
UA [auth u]
106Saccharomyces cerevisiae S288CMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit J, mitochondrialR [auth i],
VA [auth w]
59Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit K, mitochondrialS [auth k],
WA [auth x]
68Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit alpha, mitochondrial510Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P07251 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit beta, mitochondrial478Saccharomyces cerevisiae S288CMutation(s): 0 
EC: 3.6.3.14
Membrane Entity: Yes 
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit gamma, mitochondrialDB [auth j],
Z [auth G]
278Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit delta, mitochondrialAA [auth H],
EB [auth l]
138Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase catalytic sector F1 epsilon subunitBA [auth I],
FB [auth m]
61Saccharomyces cerevisiaeMutation(s): 0 
UniProt
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit 5, mitochondrialCA [auth O],
GB [auth o]
195Saccharomyces cerevisiae S288CMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit hDA [auth h],
HB [auth v]
21Saccharomyces cerevisiae S288CMutation(s): 0 
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Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ANP
Query on ANP

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AC [auth c]
IB [auth K]
KB [auth B]
MB [auth C]
OB [auth D]
AC [auth c],
IB [auth K],
KB [auth B],
MB [auth C],
OB [auth D],
QB [auth F],
SB [auth n],
UB [auth W],
WB [auth X],
YB [auth Y]
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
MG
Query on MG

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BC [auth c]
JB [auth K]
LB [auth B]
NB [auth C]
PB [auth D]
BC [auth c],
JB [auth K],
LB [auth B],
NB [auth C],
PB [auth D],
RB [auth F],
TB [auth n],
VB [auth W],
XB [auth X],
ZB [auth Y]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-01-17
    Type: Initial release