6B5B

Cryo-EM structure of the NAIP5-NLRC4-flagellin inflammasome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

The structural basis of flagellin detection by NAIP5: A strategy to limit pathogen immune evasion.

Tenthorey, J.L.Haloupek, N.Lopez-Blanco, J.R.Grob, P.Adamson, E.Hartenian, E.Lind, N.A.Bourgeois, N.M.Chacon, P.Nogales, E.Vance, R.E.

(2017) Science 358: 888-893

  • DOI: https://doi.org/10.1126/science.aao1140
  • Primary Citation of Related Structures:  
    6B5B

  • PubMed Abstract: 

    Robust innate immune detection of rapidly evolving pathogens is critical for host defense. Nucleotide-binding domain leucine-rich repeat (NLR) proteins function as cytosolic innate immune sensors in plants and animals. However, the structural basis for ligand-induced NLR activation has so far remained unknown. NAIP5 (NLR family, apoptosis inhibitory protein 5) binds the bacterial protein flagellin and assembles with NLRC4 to form a multiprotein complex called an inflammasome. Here we report the cryo-electron microscopy structure of the assembled ~1.4-megadalton flagellin-NAIP5-NLRC4 inflammasome, revealing how a ligand activates an NLR. Six distinct NAIP5 domains contact multiple conserved regions of flagellin, prying NAIP5 into an open and active conformation. We show that innate immune recognition of multiple ligand surfaces is a generalizable strategy that limits pathogen evolution and immune escape.


  • Organizational Affiliation

    Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Baculoviral IAP repeat-containing protein 1e1,403Mus musculusMutation(s): 0 
Gene Names: Naip5
UniProt
Find proteins for Q9R016 (Mus musculus)
Explore Q9R016 
Go to UniProtKB:  Q9R016
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9R016
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
NLR family CARD domain-containing protein 4
B, C
1,024Mus musculusMutation(s): 0 
Gene Names: Nlrc4
UniProt
Find proteins for Q3UP24 (Mus musculus)
Explore Q3UP24 
Go to UniProtKB:  Q3UP24
Entity Groups  
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UniProt GroupQ3UP24
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
FlagellinD [auth F]566Legionella pneumophilaMutation(s): 0 
Gene Names: fliC
UniProt
Find proteins for Q5ZVV0 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513))
Explore Q5ZVV0 
Go to UniProtKB:  Q5ZVV0
Entity Groups  
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UniProt GroupQ5ZVV0
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION1.4
MODEL REFINEMENTPHENIX1.11.1-2575
MODEL REFINEMENTI-TASSER5.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
MinecoSpainBFU2016-76220-P
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI075039
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI063302

Revision History  (Full details and data files)

  • Version 1.0: 2017-11-15
    Type: Initial release
  • Version 1.1: 2017-11-29
    Changes: Database references
  • Version 1.2: 2017-12-06
    Changes: Author supporting evidence
  • Version 1.3: 2019-12-11
    Changes: Author supporting evidence
  • Version 1.4: 2024-03-13
    Changes: Data collection, Database references