6B4A

Crystal structure of the C-Terminal Domain of Doublecortin (TgDCX) from Toxoplasma gondii ME49


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.261 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.194 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A doublecortin-domain protein of Toxoplasma and its orthologues bind to and modify the structure and organization of tubulin polymers.

Leung, J.M.Nagayasu, E.Hwang, Y.C.Liu, J.Pierce, P.G.Phan, I.Q.Prentice, R.A.Murray, J.M.Hu, K.

(2020) BMC Mol Cell Biol 21: 8-8

  • DOI: https://doi.org/10.1186/s12860-020-0249-5
  • Primary Citation of Related Structures:  
    6B4A

  • PubMed Abstract: 

    TgDCX is a doublecortin-domain protein associated with the conoid fibers, a set of strongly curved non-tubular tubulin-polymers in Toxoplasma. TgDCX deletion impairs conoid structure and parasite invasion. TgDCX contains two tubulin-binding domains: a partial P25α and the DCX/doublecortin domain. Orthologues are found in apicomplexans and their free-living relatives Chromera and Vitrella.


  • Organizational Affiliation

    Department of Biology, Indiana University, Bloomington, IN, 47405, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Doublecortin
A, B
104Toxoplasma gondiiMutation(s): 0 
Gene Names: BN1205_078130
UniProt
Find proteins for B6KAS6 (Toxoplasma gondii (strain ATCC 50861 / VEG))
Explore B6KAS6 
Go to UniProtKB:  B6KAS6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB6KAS6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 36.86α = 90
b = 53.23β = 90
c = 96.38γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
ARPmodel building

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-10-18
    Type: Initial release
  • Version 1.1: 2020-04-22
    Changes: Database references
  • Version 1.2: 2024-03-13
    Changes: Data collection, Database references