Download MendeleyCrystal structure of a malate synthase G from Mycobacterium marinum bound to acetyl CoA
Edwards, T.E., Dranow, D.M., Lorimer, D.D., Seattle Structural Genomics Center for Infectious DiseaseTo be published.
6AXE
Crystal structure of a malate synthase G from Mycobacterium marinum bound to acetyl CoA
- PDB DOI: https://doi.org/10.2210/pdb6AXE/pdb
- Classification: HYDROLASE
- Organism(s): Mycobacterium marinum M
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-09-06 Released: 2017-09-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.174
- R-Value Work: 0.152
- R-Value Observed: 0.152
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Malate synthase G | 739 | Mycobacterium marinum M | Mutation(s): 0 Gene Names: glcB, MMAR_2713 EC: 2.3.3.9 |  | |
UniProt | |||||
Find proteins for B2HSY2 (Mycobacterium marinum (strain ATCC BAA-535 / M)) Explore B2HSY2 Go to UniProtKB: B2HSY2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2HSY2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACO Query on ACO | C [auth A], F [auth B] | ACETYL COENZYME *A C23 H38 N7 O17 P3 S ZSLZBFCDCINBPY-ZSJPKINUSA-N |  | ||
| EDO Query on EDO | G [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | E [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| MG Query on MG | D [auth A], H [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.174
- R-Value Work: 0.152
- R-Value Observed: 0.152
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M36AXE
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.6 | α = 90 |
| b = 86.98 | β = 98.45 |
| c = 124.13 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-09-27 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2017-09-27
Type: Initial release - Version 1.1: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description
