6AVL
Orthorhombic Trypsin (295 K) in the presence of 50% xylose
- PDB DOI: https://doi.org/10.2210/pdb6AVL/pdb
- Classification: HYDROLASE
- Organism(s): Bos taurus
- Expression System: Bos taurus
- Mutation(s): No 
- Deposited: 2017-09-02 Released: 2017-09-20 
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.205 
- R-Value Work: 0.150 
- R-Value Observed: 0.153 
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cationic trypsin | 223 | Bos taurus | Mutation(s): 0  EC: 3.4.21.4 | ||
UniProt | |||||
Find proteins for P00760 (Bos taurus) Explore P00760  Go to UniProtKB:  P00760 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00760 | ||||
Sequence AnnotationsExpand | |||||
|
Small Molecules
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
XYS Query on XYS | F [auth A] | alpha-D-xylopyranose C5 H10 O5 SRBFZHDQGSBBOR-LECHCGJUSA-N | |||
XYP Query on XYP | E [auth A] | beta-D-xylopyranose C5 H10 O5 SRBFZHDQGSBBOR-KKQCNMDGSA-N | |||
BEN Query on BEN | C [auth A] | BENZAMIDINE C7 H8 N2 PXXJHWLDUBFPOL-UHFFFAOYSA-N | |||
SO4 Query on SO4 | D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
CA Query on CA | B [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.205 
- R-Value Work: 0.150 
- R-Value Observed: 0.153 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 54.87 | α = 90 |
b = 58.756 | β = 90 |
c = 67.484 | γ = 90 |
Software Name | Purpose |
---|---|
CrysalisPro | data collection |
CrysalisPro | data reduction |
SCALA | data scaling |
PHENIX | refinement |
Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-09-20  Deposition Author(s): Juers, D.H.
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM090248 |
Revision History (Full details and data files)
- Version 1.0: 2017-09-20
Type: Initial release - Version 1.1: 2018-09-19
Changes: Data collection, Database references - Version 1.2: 2020-01-01
Changes: Author supporting evidence, Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary