6AQ3

Crystal structure of a trafficking protein particle complex subunit 3 from Naegleria fowleri covalently bound to palmitic acid

PDB DOI: https://doi.org/10.2210/pdb6AQ3/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Naegleria fowleri
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-08-18 Released: 2017-08-30
Deposition Author(s): Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.209
R-Value Work: 0.171
R-Value Observed: 0.173

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a trafficking protein particle complex subunit 3 from Naegleria fowleri covalently bound to palmitic acid

Edwards, T.E., Abendroth, J., Lorimer, D.D.

To be published.

Macromolecule Content

Total Structure Weight: 136.79 kDa
Atom Count: 7,993
Modelled Residue Count: 1,014
Deposited Residue Count: 1,170
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
trafficking protein particle complex subunit 3	A, B, C, D, E A, B, C, D, E, F	195	Naegleria fowleri	Mutation(s): 0 Gene Names: NF0066220
UniProt
Find proteins for A0A2D0TCJ8 (Naegleria fowleri) Explore A0A2D0TCJ8 Go to UniProtKB: A0A2D0TCJ8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2D0TCJ8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PLM Query on PLM Download Ideal Coordinates CCD File SDF format, chain J [auth B] SDF format, chain G [auth A] SDF format, chain N [auth C] SDF format, chain P [auth D] SDF format, chain R [auth E] SDF format, chain V [auth F] MOL2 format, chain J [auth B] MOL2 format, chain G [auth A] MOL2 format, chain N [auth C] MOL2 format, chain P [auth D] MOL2 format, chain R [auth E] MOL2 format, chain V [auth F]	G [auth A] J [auth B] N [auth C] P [auth D] R [auth E] G [auth A], J [auth B], N [auth C], P [auth D], R [auth E], V [auth F]	PALMITIC ACID C₁₆ H₃₂ O₂ IPCSVZSSVZVIGE-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain J [auth B] Focus chain N [auth C] Focus chain P [auth D] Focus chain R [auth E] Focus chain V [auth F] Interactions & Density Focus chain G [auth A] Focus chain J [auth B] Focus chain N [auth C] Focus chain P [auth D] Focus chain R [auth E] Focus chain V [auth F]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain K [auth B] SDF format, chain L [auth B] SDF format, chain M [auth B] SDF format, chain O [auth C] SDF format, chain Q [auth D] SDF format, chain S [auth E] SDF format, chain T [auth E] SDF format, chain U [auth F] SDF format, chain W [auth F] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain K [auth B] MOL2 format, chain L [auth B] MOL2 format, chain M [auth B] MOL2 format, chain O [auth C] MOL2 format, chain Q [auth D] MOL2 format, chain S [auth E] MOL2 format, chain T [auth E] MOL2 format, chain U [auth F] MOL2 format, chain W [auth F]	H [auth A] I [auth A] K [auth B] L [auth B] M [auth B] H [auth A], I [auth A], K [auth B], L [auth B], M [auth B], O [auth C], Q [auth D], S [auth E], T [auth E], U [auth F], W [auth F]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain I [auth A] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth B] Focus chain O [auth C] Focus chain Q [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain U [auth F] Focus chain W [auth F] Interactions & Density Focus chain H [auth A] Focus chain I [auth A] Focus chain K [auth B] Focus chain L [auth B] Focus chain M [auth B] Focus chain O [auth C] Focus chain Q [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain U [auth F] Focus chain W [auth F]