Download MendeleyCrystal structure of Adenosylhomocysteinase from Elizabethkingia anophelis NUHP1 in complex with NAD and Adenosine
Abendroth, J., Delker, S.L., Lorimer, D.D., Edwards, T.E.To be published.
6APH
Crystal structure of Adenosylhomocysteinase from Elizabethkingia anophelis NUHP1 in complex with NAD and Adenosine
- PDB DOI: https://doi.org/10.2210/pdb6APH/pdb
- Classification: HYDROLASE
- Organism(s): Elizabethkingia anophelis NUHP1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-08-17 Released: 2017-08-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.170
- R-Value Work: 0.148
- R-Value Observed: 0.148
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Adenosylhomocysteinase | 445 | Elizabethkingia anophelis NUHP1 | Mutation(s): 0 Gene Names: ahcY, BD94_1936 EC: 3.3.1.1 |  | |
UniProt | |||||
Find proteins for A0A077EDS4 (Elizabethkingia anophelis NUHP1) Explore A0A077EDS4 Go to UniProtKB: A0A077EDS4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A077EDS4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | B [auth A] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| ADN Query on ADN | C [auth A] | ADENOSINE C10 H13 N5 O4 OIRDTQYFTABQOQ-KQYNXXCUSA-N |  | ||
| MPD Query on MPD | D [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.170
- R-Value Work: 0.148
- R-Value Observed: 0.148
- Space Group: P 64 2 2
- Diffraction Data: https://doi.org/10.18430/M36APH
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 132.59 | α = 90 |
| b = 132.59 | β = 90 |
| c = 102.8 | γ = 120 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| ARP | model building |
| Coot | model building |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2017-08-30 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2017-08-30
Type: Initial release - Version 1.1: 2024-03-13
Changes: Data collection, Database references
