6Y5L
Signal Subtracted Extended Intermediate form of X-31 Influenza Haemagglutinin at pH 5 (State IV)
- PDB DOI: https://doi.org/10.2210/pdb6Y5L/pdb
- EM Map EMD-10701: EMDB EMDataResource
- Classification: VIRAL PROTEIN
- Organism(s): unidentified influenza virus
- Expression System: Gallus gallus
- Mutation(s): No
- Membrane Protein: Yes mpstruc
- Deposited: 2020-02-25 Released: 2020-06-10
- Funding Organization(s): The Francis Crick Institute
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.60 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| X-31 Influenza Haemagglutinin HA1,X-31 Influenza Haemagglutinin HA1 | A, C, D [auth E] | 70 | unidentified influenza virus | Mutation(s): 0 Membrane Entity: Yes |  |
UniProt | |||||
Find proteins for P03437 (Influenza A virus (strain A/Aichi/2/1968 H3N2)) Explore P03437 Go to UniProtKB: P03437 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P03437 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| X-31 Influenza Haemagglutinin HA2 | B, E [auth D], F | 172 | unidentified influenza virus | Mutation(s): 0 Membrane Entity: Yes |  |
UniProt | |||||
Find proteins for P03437 (Influenza A virus (strain A/Aichi/2/1968 H3N2)) Explore P03437 Go to UniProtKB: P03437 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P03437 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | G [auth A], H [auth C], I [auth E] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.60 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | cryoSPARC | 2 |
| MODEL REFINEMENT | PHENIX |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-06-10 Deposition Author(s): Benton, D.J., Rosenthal, P.B.
| Funding Organization | Location | Grant Number |
|---|---|---|
| The Francis Crick Institute | United Kingdom | FC001078 |
| The Francis Crick Institute | United Kingdom | FC001143 |
Revision History (Full details and data files)
- Version 1.0: 2020-06-10
Type: Initial release - Version 1.1: 2020-07-15
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary
