6XPO
Influenza hemagglutinin A/Bangkok/01/1979(H3N2)
- PDB DOI: https://doi.org/10.2210/pdb6XPO/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus (A/Bangkok/1/1979(H3N2))
- Expression System: Trichoplusia ni
- Mutation(s): No 
- Deposited: 2020-07-08 Released: 2021-05-19 
- Funding Organization(s): Howard Hughes Medical Institute (HHMI), National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.262 
- R-Value Work: 0.226 
- R-Value Observed: 0.228 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Hemagglutinin | 519 | Influenza A virus (A/Bangkok/1/1979(H3N2)) | Mutation(s): 0  Gene Names: HA | ||
UniProt | |||||
Find proteins for Q1K9S3 (Influenza A virus (strain A/Bangkok/1/1979 H3N2)) Explore Q1K9S3  Go to UniProtKB:  Q1K9S3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q1K9S3 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D, E, G, H, I D, E, G, H, I, J, L, M, N, O, P, Q | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | F | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G00395TQ GlyCosmos:  G00395TQ GlyGen:  G00395TQ |
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | R [auth A] S [auth A] T [auth A] U [auth A] V [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.262 
- R-Value Work: 0.226 
- R-Value Observed: 0.228 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 200.66 | α = 90 |
b = 186.18 | β = 110.13 |
c = 107.4 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-05-19  Deposition Author(s): McCarthy, K.R., Harrison, S.C.
Funding Organization | Location | Grant Number |
---|---|---|
Howard Hughes Medical Institute (HHMI) | United States | -- |
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | AI089618 |
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | AI117892 |
Revision History (Full details and data files)
- Version 1.0: 2021-05-19
Type: Initial release - Version 1.1: 2021-07-14
Changes: Database references - Version 1.2: 2021-07-28
Changes: Database references - Version 1.3: 2023-10-18
Changes: Data collection, Database references, Refinement description