Download MendeleyCrystal structure of prephenate dehydratase from Brucella melitensis biovar abortus 2308 in complex with phenylalanine
Abendroth, J., Dranow, D.M., Lorimer, D.D., Bullen, J.C., Sankaran, B., Horanyi, P.S., Edwards, T.E.To be published.
6VH5
Crystal structure of prephenate dehydratase from brucella melitensis biovar abortus 2308 in complex with phenylalanine
- PDB DOI: https://doi.org/10.2210/pdb6VH5/pdb
- Classification: HYDROLASE
- Organism(s): Brucella abortus 2308
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2020-01-09 Released: 2020-01-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.251
- R-Value Work: 0.207
- R-Value Observed: 0.208
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Prephenate dehydratase:Amino acid-binding ACT | 308 | Brucella abortus 2308 | Mutation(s): 0 Gene Names: pheA, BAB1_0034 EC: 4.2.1.51 |  | |
UniProt | |||||
Find proteins for Q2YPM5 (Brucella abortus (strain 2308)) Explore Q2YPM5 Go to UniProtKB: Q2YPM5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2YPM5 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PHE Query on PHE | E [auth A], G [auth B], J [auth C], L [auth D] | PHENYLALANINE C9 H11 N O2 COLNVLDHVKWLRT-QMMMGPOBSA-N |  | ||
| EDO Query on EDO | F [auth A] H [auth B] I [auth B] K [auth C] M [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.251
- R-Value Work: 0.207
- R-Value Observed: 0.208
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/m36vh5
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 226.95 | α = 90 |
| b = 61.25 | β = 112.95 |
| c = 120.05 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| MR-Rosetta | phasing |
Entry History
Deposition Data
- Released Date: 2020-01-29 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2020-01-29
Type: Initial release - Version 1.1: 2024-03-06
Changes: Data collection, Database references, Refinement description - Version 1.2: 2024-04-03
Changes: Refinement description
