6UUL
Crystal structure of broad and potent HIV-1 neutralizing antibody 438-D5
- PDB DOI: https://doi.org/10.2210/pdb6UUL/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2019-10-30 Released: 2020-09-23 
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.06 Å
- R-Value Free: 0.245 
- R-Value Work: 0.201 
- R-Value Observed: 0.203 
wwPDB Validation   3D Report Full Report
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This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
D5 Fab Heavy Chain | 235 | Homo sapiens | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
D5 Fab Light Chain | 215 | Homo sapiens | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth D] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
GOL Query on GOL | G [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.06 Å
- R-Value Free: 0.245 
- R-Value Work: 0.201 
- R-Value Observed: 0.203 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 92.731 | α = 90 |
b = 97.87 | β = 90 |
c = 125.55 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
Coot | model building |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |
Structure Validation
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Entry History & Funding Information
Deposition Data
- Released Date: 2020-09-23  Deposition Author(s): Kumar, S., Wilson, I.A.
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2020-09-23
Type: Initial release - Version 1.1: 2020-09-30
Changes: Database references - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description