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Davies, D.R., Dranow, D.M., Lorimer, D.D., Edwards, T.E., Horanyi, P.S.To be published.
6UH2
Crystal Structure of Short Chain Dehydrogenase from Leptospira borgpetersenii serovar Hardjo-bovis (Strain JB197) with bound NAD+
- PDB DOI: https://doi.org/10.2210/pdb6UH2/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Leptospira borgpetersenii serovar Hardjo-bovis str. JB197
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-09-26 Released: 2019-10-09
- Funding Organization(s): National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.191
- R-Value Work: 0.155
- R-Value Observed: 0.157
wwPDB Validation 3D Report Full Report
Currently 6UH2 does not have a validation slider image.
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Short chain dehydrogenase | 263 | Leptospira borgpetersenii serovar Hardjo-bovis str. JB197 | Mutation(s): 0 Gene Names: LBJ_1131 |  | |
UniProt | |||||
Find proteins for Q04TM7 (Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)) Explore Q04TM7 Go to UniProtKB: Q04TM7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q04TM7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | C [auth A], D [auth B] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.191
- R-Value Work: 0.155
- R-Value Observed: 0.157
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/m36uh2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.36 | α = 90 |
| b = 131.26 | β = 90 |
| c = 120.42 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Structure Validation
Currently 6UH2 does not have a validation slider image.
Entry History & Funding Information
Deposition Data
- Released Date: 2019-10-09 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI) | United States | HHSN272201700059C |
Revision History (Full details and data files)
- Version 1.0: 2019-10-09
Type: Initial release - Version 1.1: 2019-12-18
Changes: Author supporting evidence - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description
