6UDG

Crystal structure of a Probable thiol peroxidase from Elizabethkingia anophelis NUHP1

PDB DOI: https://doi.org/10.2210/pdb6UDG/pdb

Classification: OXIDOREDUCTASE
Organism(s): Elizabethkingia anophelis NUHP1
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2019-09-19 Released: 2019-10-16
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.281
R-Value Work: 0.209
R-Value Observed: 0.217

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a Probable thiol peroxidase from Elizabethkingia anophelis NUHP1

Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 74.37 kDa
Atom Count: 4,557
Modelled Residue Count: 648
Deposited Residue Count: 692
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thiol peroxidase	A, B, C, D	173	Elizabethkingia anophelis NUHP1	Mutation(s): 0 Gene Names: tpx, BD94_2659 EC: 1.11.1.15
UniProt
Find proteins for A0A077EJK0 (Elizabethkingia anophelis NUHP1) Explore A0A077EJK0 Go to UniProtKB: A0A077EJK0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A077EJK0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.281
R-Value Work: 0.209
R-Value Observed: 0.217
Space Group: P 2₁ 2₁ 2₁
Diffraction Data: https://doi.org/10.18430/m36udg

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.59	α = 90
b = 107.8	β = 90
c = 113.7	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MoRDa	phasing
PHENIX	model building
Coot	model building

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-10-16

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2019-10-16
Type: Initial release
Version 1.1: 2024-04-03
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.