6PTV

Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Rickettsia rickettsii bound to griselimycin

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.169 

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This is version 1.2 of the entry. See complete history. 


Literature

Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Rickettsia rickettsii bound to griselimycin

Edwards, T.E., Abendroth, J., Horanyi, P.S., Lorimer, D.D., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta sliding clampA,
B,
D [auth C],
F [auth D]		387Rickettsia rickettsii str. 'Sheila SmithMutation(s): 0 
Gene Names: A1G_03290
UniProt
Find proteins for A0A0H3AWV3 (Rickettsia rickettsii (strain Sheila Smith))
Explore A0A0H3AWV3 
Go to UniProtKB:  A0A0H3AWV3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H3AWV3
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLYC [auth X],
E [auth Y]		11Streptomyces griseusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  3 Unique
IDChains TypeFormula2D DiagramParent
MP8
Query on MP8		C [auth X],
E [auth Y]		L-PEPTIDE LINKINGC6 H11 N O2PRO
MVA
Query on MVA		C [auth X],
E [auth Y]		L-PEPTIDE LINKINGC6 H13 N O2VAL
NZC
Query on NZC		C [auth X],
E [auth Y]		L-PEPTIDE LINKINGC5 H11 N O3THR
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.169 
  • R-Value Observed: 0.169 
  • Space Group: P 1
  • Diffraction Data: https://doi.org/10.18430/M36PTV
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.21α = 109.38
b = 82.79β = 89.94
c = 82.86γ = 106.53
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing
PDB_EXTRACTdata extraction

Structure Validation

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View more in-depth experimental data
Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-08-07
    Type: Initial release
  • Version 1.1: 2023-10-11
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.2: 2023-11-15
    Changes: Data collection, Derived calculations