Download MendeleyCrystal structure of Asparagine-tRNA ligase from Elizabethkingia sp. CCUG 26117
Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
6PQH
Crystal structure of Asparagine-tRNA ligase from Elizabethkingia sp. CCUG 26117
- PDB DOI: https://doi.org/10.2210/pdb6PQH/pdb
- Classification: LIGASE
- Organism(s): Elizabethkingia sp.
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2019-07-09 Released: 2019-07-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.231
- R-Value Work: 0.181
- R-Value Observed: 0.181
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Asparagine--tRNA ligase | 490 | Elizabethkingia sp. | Mutation(s): 0 Gene Names: asnS EC: 6.1.1.22 |  | |
UniProt | |||||
Find proteins for X5KA67 (Elizabethkingia anophelis) Explore X5KA67 Go to UniProtKB: X5KA67 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | X5KA67 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | E [auth A], F [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.231
- R-Value Work: 0.181
- R-Value Observed: 0.181
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/m36pqh
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.4 | α = 90 |
| b = 110.75 | β = 97.09 |
| c = 137.18 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
| PHENIX | model building |
| Coot | model building |
| BUCCANEER | model building |
| MR-Rosetta | phasing |
Entry History
Deposition Data
- Released Date: 2019-07-31 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2019-07-31
Type: Initial release - Version 1.1: 2024-03-13
Changes: Data collection, Database references - Version 1.2: 2024-04-03
Changes: Refinement description
