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Stogios, P.J.To be published.
6O62
Crystal structure of Sec4p, a Rab family GTPase from Candida albicans
- PDB DOI: https://doi.org/10.2210/pdb6O62/pdb
- Classification: PROTEIN BINDING
- Organism(s): Candida albicans SC5314
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-03-05 Released: 2019-04-03
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.315
- R-Value Work: 0.257
- R-Value Observed: 0.259
wwPDB Validation 3D Report Full Report
Currently 6O62 does not have a validation slider image.
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ras-related protein SEC4 | 184 | Candida albicans SC5314 | Mutation(s): 0 Gene Names: SEC4, CAALFM_CR01750CA, Ca49C4.03c, CaO19.10103, CaO19.2571 |  | |
UniProt | |||||
Find proteins for P0CY31 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Explore P0CY31 Go to UniProtKB: P0CY31 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0CY31 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP Query on GDP | B [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.315
- R-Value Work: 0.257
- R-Value Observed: 0.259
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 96.301 | α = 90 |
| b = 38.082 | β = 105.09 |
| c = 43.115 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
| PHENIX | model building |
| Coot | model building |
Structure Validation
Currently 6O62 does not have a validation slider image.
Entry History & Funding Information
Deposition Data
- Released Date: 2019-04-03 Deposition Author(s): Stogios, P.J., Skarina, T., Di Leo, R., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |
Revision History (Full details and data files)
- Version 1.0: 2019-04-03
Type: Initial release - Version 1.1: 2019-12-18
Changes: Author supporting evidence - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description
