6NZU

Structure of the human frataxin-bound iron-sulfur cluster assembly complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.2 of the entry. See complete history


Literature

Structure of the human frataxin-bound iron-sulfur cluster assembly complex provides insight into its activation mechanism.

Fox, N.G.Yu, X.Feng, X.Bailey, H.J.Martelli, A.Nabhan, J.F.Strain-Damerell, C.Bulawa, C.Yue, W.W.Han, S.

(2019) Nat Commun 10: 2210-2210

  • DOI: https://doi.org/10.1038/s41467-019-09989-y
  • Primary Citation of Related Structures:  
    6NZU

  • PubMed Abstract: 

    The core machinery for de novo biosynthesis of iron-sulfur clusters (ISC), located in the mitochondria matrix, is a five-protein complex containing the cysteine desulfurase NFS1 that is activated by frataxin (FXN), scaffold protein ISCU, accessory protein ISD11, and acyl-carrier protein ACP. Deficiency in FXN leads to the loss-of-function neurodegenerative disorder Friedreich's ataxia (FRDA). Here the 3.2 Å resolution cryo-electron microscopy structure of the FXN-bound active human complex, containing two copies of the NFS1-ISD11-ACP-ISCU-FXN hetero-pentamer, delineates the interactions of FXN with other component proteins of the complex. FXN binds at the interface of two NFS1 and one ISCU subunits, modifying the local environment of a bound zinc ion that would otherwise inhibit NFS1 activity in complexes without FXN. Our structure reveals how FXN facilitates ISC production through stabilizing key loop conformations of NFS1 and ISCU at the protein-protein interfaces, and suggests how FRDA clinical mutations affect complex formation and FXN activation.


  • Organizational Affiliation

    Structural Genomics Consortium, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, OX3 7DQ, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cysteine desulfurase, mitochondrial
A, E
403Homo sapiensMutation(s): 0 
Gene Names: NFS1NIFSHUSSY-08
EC: 2.8.1.7
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Find proteins for Q9Y697 (Homo sapiens)
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PHAROS:  Q9Y697
GTEx:  ENSG00000244005 
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UniProt GroupQ9Y697
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
LYR motif-containing protein 4
B, F
92Homo sapiensMutation(s): 0 
Gene Names: LYRM4C6orf149ISD11CGI-203
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Find proteins for Q9HD34 (Homo sapiens)
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PHAROS:  Q9HD34
GTEx:  ENSG00000214113 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl carrier protein
C, G
74Escherichia coliMutation(s): 0 
Gene Names: acpPDQL48_09575EOL36_14065
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Iron-sulfur cluster assembly enzyme ISCU, mitochondrial
D, H
124Homo sapiensMutation(s): 0 
Gene Names: ISCUNIFUN
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Find proteins for Q9H1K1 (Homo sapiens)
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PHAROS:  Q9H1K1
GTEx:  ENSG00000136003 
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UniProt GroupQ9H1K1
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Frataxin, mitochondrial
I, J
132Homo sapiensMutation(s): 0 
Gene Names: FXNFRDAX25
EC: 1.16.3.1
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Find proteins for Q16595 (Homo sapiens)
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Go to UniProtKB:  Q16595
PHAROS:  Q16595
GTEx:  ENSG00000165060 
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UniProt GroupQ16595
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-05-22
    Type: Initial release
  • Version 1.1: 2019-05-29
    Changes: Data collection, Database references
  • Version 1.2: 2019-07-10
    Changes: Data collection, Database references, Source and taxonomy, Structure summary