6NWY

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.241 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.

Hoffer, E., Hong, S., Sunita, S., Maehigashi, T., Gonzalez Jnr, R.L., Whitford, P., Dunham, C.M.

(2020) Elife 9

  • DOI: https://doi.org/10.7554/eLife.51898
  • Primary Citation of Related Structures:  
    6NSH, 6NTA, 6NUO, 6NWY, 6O3M, 6OSI

  • PubMed Abstract: 

    Modifications in the tRNA anticodon loop, adjacent to the three-nucleotide anticodon, influence translation fidelity by stabilizing the tRNA to allow for accurate reading of the mRNA genetic code. One example is the N1-methylguanosine modification at guanine nucleotide 37 (m 1 G37) located in the anticodon loop andimmediately adjacent to the anticodon nucleotides 34, 35, 36. The absence of m 1 G37 in tRNA Pro causes +1 frameshifting on polynucleotide, slippery codons. Here, we report structures of the bacterial ribosome containing tRNA Pro bound to either cognate or slippery codons to determine how the m 1 G37 modification prevents mRNA frameshifting. The structures reveal that certain codon-anticodon contexts and the lack of m 1 G37 destabilize interactions of tRNA Pro with the P site of the ribosome, causing large conformational changes typically only seen during EF-G-mediated translocation of the mRNA-tRNA pairs. These studies provide molecular insights into how m 1 G37 stabilizes the interactions of tRNA Pro with the ribosome in the context of a slippery mRNA codon.

    • Organizational Affiliation: 

    Department of Biochemistry, Emory University School of Medicine, Atlanta, United States.


Macromolecules

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2B [auth QB],
DB [auth XB]		256Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3C [auth QC],
EB [auth XC]		239Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4D [auth QD],
FB [auth XD]		209Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5E [auth QE],
GB [auth XE]		162Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6F [auth QF],
HB [auth XF]		101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7G [auth QG],
IB [auth XG]		156Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8H [auth QH],
JB [auth XH]		138Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9I [auth QI],
KB [auth XI]		128Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10J [auth QJ],
LB [auth XJ]		105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11K [auth QK],
MB [auth XK]		129Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12L [auth QL],
NB [auth XL]		132Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13M [auth QM],
OB [auth XM]		126Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14 type ZN [auth QN],
PB [auth XN]		61Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15O [auth QO],
QB [auth XO]		89Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16P [auth QP],
RB [auth XP]		88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17Q [auth QQ],
SB [auth XQ]		105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18R [auth QR],
TB [auth XR]		88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19S [auth QS],
UB [auth XS]		93Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20T [auth QT],
VB [auth XT]		106Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein ThxU [auth QU],
WB [auth XU]		27Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27X [auth R0],
ZB [auth Y0]		85Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28AC [auth Y1],
Y [auth R1]		98Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29BC [auth Y2],
Z [auth R2]		72Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30AA [auth R3],
CC [auth Y3]		60Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L31BA [auth R4],
DC [auth Y4]		71Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32CA [auth R5],
EC [auth Y5]		60Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33DA [auth R6],
FC [auth Y6]		54Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34EA [auth R7],
GC [auth Y7]		49Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35FA [auth R8],
HC [auth Y8]		65Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L36GA [auth R9],
IC [auth Y9]		37Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2JA [auth RD],
LC [auth YD]		276Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3KA [auth RE],
MC [auth YE]		206Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4LA [auth RF],
NC [auth YF]		210Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5MA [auth RG],
OC [auth YG]		182Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6NA [auth RH],
PC [auth YH]		180Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9OA [auth RI],
QC [auth YI]		148Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13PA [auth RN],
RC [auth YN]		140Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14QA [auth RO],
SC [auth YO]		122Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15RA [auth RP],
TC [auth YP]		150Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16SA [auth RQ],
UC [auth YQ]		141Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17TA [auth RR],
VC [auth YR]		118Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q9Z9H5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18UA [auth RS],
WC [auth YS]		112Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHQ4 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19VA [auth RT],
XC [auth YT]		146Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P60490 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20WA [auth RU],
YC [auth YU]		118Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P60491 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21XA [auth RV],
ZC [auth YV]		101Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P60492 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22AD [auth YW],
YA [auth RW]		113Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23BD [auth YX],
ZA [auth RX]		96Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24AB [auth RY],
CD [auth YY]		110Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25BB [auth RZ],
DD [auth YZ]		206Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHZ1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 1
MoleculeChains LengthOrganismImage
16S rRNAA [auth QA],
CB [auth XA]		1,521Thermus thermophilus HB8
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Entity ID: 22
MoleculeChains LengthOrganismImage
E-site tRNA-ProV [auth QV],
XB [auth XV]		77Escherichia coli
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Entity ID: 23
MoleculeChains LengthOrganismImage
mRNAW [auth QX],
YB [auth XX]		19Escherichia coli
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Entity ID: 34
MoleculeChains LengthOrganismImage
23S rRNAHA [auth RA],
JC [auth YA]		2,915Thermus thermophilus HB8
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Entity ID: 35
MoleculeChains LengthOrganismImage
5S rRNAIA [auth RB],
KC [auth YB]		122Thermus thermophilus HB8
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SF4
Query on SF4
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NG [auth QD],
WBA [auth XD]		IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
ZN
Query on ZN
Download Ideal Coordinates CCD File 
AH [auth R9]
BCA [auth Y5]
DCA [auth Y6]
GCA [auth Y9]
KY [auth RY]
AH [auth R9],
BCA [auth Y5],
DCA [auth Y6],
GCA [auth Y9],
KY [auth RY],
SG [auth QN],
VTA [auth YY],
XG [auth R5],
YBA [auth XN],
YG [auth R6]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
AAA [auth XA]
ABA [auth XA]
ACA [auth Y2]
ADA [auth YA]
AE [auth QA]
AAA [auth XA],
ABA [auth XA],
ACA [auth Y2],
ADA [auth YA],
AE [auth QA],
AEA [auth YA],
AF [auth QA],
AFA [auth YA],
AG [auth QA],
AGA [auth YA],
AHA [auth YA],
AI [auth RA],
AIA [auth YA],
AJ [auth RA],
AJA [auth YA],
AK [auth RA],
AKA [auth YA],
AL [auth RA],
ALA [auth YA],
AM [auth RA],
AMA [auth YA],
AN [auth RA],
ANA [auth YA],
AO [auth RA],
AOA [auth YA],
AP [auth RA],
APA [auth YA],
AQ [auth RA],
AQA [auth YA],
AR [auth RA],
ARA [auth YA],
AS [auth RA],
ASA [auth YA],
AT [auth RA],
ATA [auth YA],
AU [auth RA],
AV [auth RA],
AW [auth RA],
AX [auth RA],
AY [auth RE],
AZ [auth XA],
BAA [auth XA],
BBA [auth XA],
BDA [auth YA],
BE [auth QA],
BEA [auth YA],
BF [auth QA],
BFA [auth YA],
BG [auth QA],
BGA [auth YA],
BH [auth RA],
BHA [auth YA],
BI [auth RA],
BIA [auth YA],
BJ [auth RA],
BJA [auth YA],
BK [auth RA],
BKA [auth YA],
BL [auth RA],
BLA [auth YA],
BM [auth RA],
BMA [auth YA],
BN [auth RA],
BNA [auth YA],
BO [auth RA],
BOA [auth YA],
BP [auth RA],
BPA [auth YA],
BQ [auth RA],
BQA [auth YA],
BR [auth RA],
BRA [auth YA],
BS [auth RA],
BSA [auth YA],
BT [auth RA],
BTA [auth YA],
BU [auth RA],
BV [auth RA],
BW [auth RA],
BX [auth RA],
BY [auth RE],
BZ [auth XA],
CAA [auth XA],
CBA [auth XA],
CCA [auth Y5],
CDA [auth YA],
CE [auth QA],
CEA [auth YA],
CF [auth QA],
CFA [auth YA],
CG [auth QA],
CGA [auth YA],
CH [auth RA],
CHA [auth YA],
CI [auth RA],
CIA [auth YA],
CJ [auth RA],
CJA [auth YA],
CK [auth RA],
CKA [auth YA],
CL [auth RA],
CLA [auth YA],
CM [auth RA],
CMA [auth YA],
CN [auth RA],
CNA [auth YA],
CO [auth RA],
COA [auth YA],
CP [auth RA],
CPA [auth YA],
CQ [auth RA],
CQA [auth YA],
CR [auth RA],
CRA [auth YA],
CS [auth RA],
CSA [auth YA],
CT [auth RA],
CTA [auth YA],
CU [auth RA],
CV [auth RA],
CW [auth RA],
CX [auth RA],
CY [auth RE],
CZ [auth XA],
DAA [auth XA],
DBA [auth XA],
DDA [auth YA],
DE [auth QA],
DEA [auth YA],
DF [auth QA],
DFA [auth YA],
DG [auth QA],
DGA [auth YA],
DH [auth RA],
DHA [auth YA],
DI [auth RA],
DIA [auth YA],
DJ [auth RA],
DJA [auth YA],
DK [auth RA],
DKA [auth YA],
DL [auth RA],
DLA [auth YA],
DM [auth RA],
DMA [auth YA],
DN [auth RA],
DNA [auth YA],
DO [auth RA],
DOA [auth YA],
DP [auth RA],
DPA [auth YA],
DQ [auth RA],
DQA [auth YA],
DR [auth RA],
DRA [auth YA],
DS [auth RA],
DSA [auth YA],
DT [auth RA],
DTA [auth YA],
DU [auth RA],
DV [auth RA],
DW [auth RA],
DX [auth RA],
DY [auth RE],
DZ [auth XA],
EAA [auth XA],
EBA [auth XA],
ECA [auth Y7],
ED [auth QA],
EDA [auth YA],
EE [auth QA],
EEA [auth YA],
EF [auth QA],
EFA [auth YA],
EG [auth QA],
EGA [auth YA],
EH [auth RA],
EHA [auth YA],
EI [auth RA],
EIA [auth YA],
EJ [auth RA],
EJA [auth YA],
EK [auth RA],
EKA [auth YA],
EL [auth RA],
ELA [auth YA],
EM [auth RA],
EMA [auth YA],
EN [auth RA],
ENA [auth YA],
EO [auth RA],
EOA [auth YA],
EP [auth RA],
EPA [auth YA],
EQ [auth RA],
EQA [auth YA],
ER [auth RA],
ERA [auth YA],
ES [auth RA],
ESA [auth YA],
ET [auth RA],
ETA [auth YB],
EU [auth RA],
EV [auth RA],
EW [auth RA],
EX [auth RA],
EY [auth RF],
EZ [auth XA],
FAA [auth XA],
FBA [auth XA],
FCA [auth Y8],
FD [auth QA],
FDA [auth YA],
FE [auth QA],
FEA [auth YA],
FF [auth QA],
FFA [auth YA],
FG [auth QA],
FGA [auth YA],
FH [auth RA],
FHA [auth YA],
FI [auth RA],
FIA [auth YA],
FJ [auth RA],
FJA [auth YA],
FK [auth RA],
FKA [auth YA],
FL [auth RA],
FLA [auth YA],
FM [auth RA],
FMA [auth YA],
FN [auth RA],
FNA [auth YA],
FO [auth RA],
FOA [auth YA],
FP [auth RA],
FPA [auth YA],
FQ [auth RA],
FQA [auth YA],
FR [auth RA],
FRA [auth YA],
FS [auth RA],
FSA [auth YA],
FT [auth RA],
FTA [auth YB],
FU [auth RA],
FV [auth RA],
FW [auth RA],
FX [auth RA],
FY [auth RF],
FZ [auth XA],
GAA [auth XA],
GBA [auth XA],
GD [auth QA],
GDA [auth YA],
GE [auth QA],
GEA [auth YA],
GF [auth QA],
GFA [auth YA],
GG [auth QA],
GGA [auth YA],
GH [auth RA],
GHA [auth YA],
GI [auth RA],
GIA [auth YA],
GJ [auth RA],
GJA [auth YA],
GK [auth RA],
GKA [auth YA],
GL [auth RA],
GLA [auth YA],
GM [auth RA],
GMA [auth YA],
GN [auth RA],
GNA [auth YA],
GO [auth RA],
GOA [auth YA],
GP [auth RA],
GPA [auth YA],
GQ [auth RA],
GQA [auth YA],
GR [auth RA],
GRA [auth YA],
GS [auth RA],
GSA [auth YA],
GT [auth RA],
GTA [auth YB],
GU [auth RA],
GV [auth RA],
GW [auth RA],
GX [auth RA],
GY [auth RN],
GZ [auth XA],
HAA [auth XA],
HBA [auth XA],
HCA [auth YA],
HD [auth QA],
HDA [auth YA],
HE [auth QA],
HEA [auth YA],
HF [auth QA],
HFA [auth YA],
HG [auth QA],
HGA [auth YA],
HH [auth RA],
HHA [auth YA],
HI [auth RA],
HIA [auth YA],
HJ [auth RA],
HJA [auth YA],
HK [auth RA],
HKA [auth YA],
HL [auth RA],
HLA [auth YA],
HM [auth RA],
HMA [auth YA],
HN [auth RA],
HNA [auth YA],
HO [auth RA],
HOA [auth YA],
HP [auth RA],
HPA [auth YA],
HQ [auth RA],
HQA [auth YA],
HR [auth RA],
HRA [auth YA],
HS [auth RA],
HSA [auth YA],
HT [auth RA],
HTA [auth YB],
HU [auth RA],
HV [auth RA],
HW [auth RA],
HX [auth RA],
HY [auth RO],
HZ [auth XA],
IAA [auth XA],
IBA [auth XA],
ICA [auth YA],
ID [auth QA],
IDA [auth YA],
IE [auth QA],
IEA [auth YA],
IF [auth QA],
IFA [auth YA],
IG [auth QA],
IGA [auth YA],
IH [auth RA],
IHA [auth YA],
II [auth RA],
IIA [auth YA],
IJ [auth RA],
IJA [auth YA],
IK [auth RA],
IKA [auth YA],
IL [auth RA],
ILA [auth YA],
IM [auth RA],
IMA [auth YA],
IN [auth RA],
INA [auth YA],
IO [auth RA],
IOA [auth YA],
IP [auth RA],
IPA [auth YA],
IQ [auth RA],
IQA [auth YA],
IR [auth RA],
IRA [auth YA],
IS [auth RA],
ISA [auth YA],
IT [auth RA],
ITA [auth YB],
IU [auth RA],
IV [auth RA],
IW [auth RA],
IX [auth RA],
IY [auth RP],
IZ [auth XA],
JAA [auth XA],
JBA [auth XA],
JCA [auth YA],
JD [auth QA],
JDA [auth YA],
JE [auth QA],
JEA [auth YA],
JF [auth QA],
JFA [auth YA],
JG [auth QA],
JGA [auth YA],
JH [auth RA],
JHA [auth YA],
JI [auth RA],
JIA [auth YA],
JJ [auth RA],
JJA [auth YA],
JK [auth RA],
JKA [auth YA],
JL [auth RA],
JLA [auth YA],
JM [auth RA],
JMA [auth YA],
JN [auth RA],
JNA [auth YA],
JO [auth RA],
JOA [auth YA],
JP [auth RA],
JPA [auth YA],
JQ [auth RA],
JQA [auth YA],
JR [auth RA],
JRA [auth YA],
JS [auth RA],
JSA [auth YA],
JT [auth RA],
JTA [auth YB],
JU [auth RA],
JV [auth RA],
JW [auth RA],
JX [auth RA],
JY [auth RQ],
JZ [auth XA],
KAA [auth XA],
KBA [auth XA],
KCA [auth YA],
KD [auth QA],
KDA [auth YA],
KE [auth QA],
KEA [auth YA],
KF [auth QA],
KFA [auth YA],
KG [auth QA],
KGA [auth YA],
KH [auth RA],
KHA [auth YA],
KI [auth RA],
KIA [auth YA],
KJ [auth RA],
KJA [auth YA],
KK [auth RA],
KKA [auth YA],
KL [auth RA],
KLA [auth YA],
KM [auth RA],
KMA [auth YA],
KN [auth RA],
KNA [auth YA],
KO [auth RA],
KOA [auth YA],
KP [auth RA],
KPA [auth YA],
KQ [auth RA],
KQA [auth YA],
KR [auth RA],
KRA [auth YA],
KS [auth RA],
KSA [auth YA],
KT [auth RA],
KTA [auth YB],
KU [auth RA],
KV [auth RA],
KW [auth RA],
KX [auth RA],
KZ [auth XA],
LAA [auth XA],
LBA [auth XA],
LCA [auth YA],
LD [auth QA],
LDA [auth YA],
LE [auth QA],
LEA [auth YA],
LF [auth QA],
LFA [auth YA],
LG [auth QA],
LGA [auth YA],
LH [auth RA],
LHA [auth YA],
LI [auth RA],
LIA [auth YA],
LJ [auth RA],
LJA [auth YA],
LK [auth RA],
LKA [auth YA],
LL [auth RA],
LLA [auth YA],
LM [auth RA],
LMA [auth YA],
LN [auth RA],
LNA [auth YA],
LO [auth RA],
LOA [auth YA],
LP [auth RA],
LPA [auth YA],
LQ [auth RA],
LQA [auth YA],
LR [auth RA],
LRA [auth YA],
LS [auth RA],
LSA [auth YA],
LT [auth RA],
LTA [auth YB],
LU [auth RA],
LV [auth RA],
LW [auth RA],
LX [auth RA],
LY [auth XA],
LZ [auth XA],
MAA [auth XA],
MBA [auth XA],
MCA [auth YA],
MD [auth QA],
MDA [auth YA],
ME [auth QA],
MEA [auth YA],
MF [auth QA],
MFA [auth YA],
MG [auth QA],
MGA [auth YA],
MH [auth RA],
MHA [auth YA],
MI [auth RA],
MIA [auth YA],
MJ [auth RA],
MJA [auth YA],
MK [auth RA],
MKA [auth YA],
ML [auth RA],
MLA [auth YA],
MM [auth RA],
MMA [auth YA],
MN [auth RA],
MNA [auth YA],
MO [auth RA],
MOA [auth YA],
MP [auth RA],
MPA [auth YA],
MQ [auth RA],
MQA [auth YA],
MR [auth RA],
MRA [auth YA],
MS [auth RA],
MSA [auth YA],
MT [auth RA],
MTA [auth YD],
MU [auth RA],
MV [auth RA],
MW [auth RA],
MX [auth RA],
MY [auth XA],
MZ [auth XA],
NAA [auth XA],
NBA [auth XA],
NCA [auth YA],
ND [auth QA],
NDA [auth YA],
NE [auth QA],
NEA [auth YA],
NF [auth QA],
NFA [auth YA],
NGA [auth YA],
NH [auth RA],
NHA [auth YA],
NI [auth RA],
NIA [auth YA],
NJ [auth RA],
NJA [auth YA],
NK [auth RA],
NKA [auth YA],
NL [auth RA],
NLA [auth YA],
NM [auth RA],
NMA [auth YA],
NN [auth RA],
NNA [auth YA],
NO [auth RA],
NOA [auth YA],
NP [auth RA],
NPA [auth YA],
NQ [auth RA],
NQA [auth YA],
NR [auth RA],
NRA [auth YA],
NS [auth RA],
NSA [auth YA],
NT [auth RA],
NTA [auth YE],
NU [auth RA],
NV [auth RA],
NW [auth RA],
NX [auth RA],
NY [auth XA],
NZ [auth XA],
OAA [auth XA],
OBA [auth XA],
OCA [auth YA],
OD [auth QA],
ODA [auth YA],
OE [auth QA],
OEA [auth YA],
OF [auth QA],
OFA [auth YA],
OG [auth QF],
OGA [auth YA],
OH [auth RA],
OHA [auth YA],
OI [auth RA],
OIA [auth YA],
OJ [auth RA],
OJA [auth YA],
OK [auth RA],
OKA [auth YA],
OL [auth RA],
OLA [auth YA],
OM [auth RA],
OMA [auth YA],
ON [auth RA],
ONA [auth YA],
OO [auth RA],
OOA [auth YA],
OP [auth RA],
OPA [auth YA],
OQ [auth RA],
OQA [auth YA],
OR [auth RA],
ORA [auth YA],
OS [auth RA],
OSA [auth YA],
OT [auth RA],
OTA [auth YE],
OU [auth RA],
OV [auth RA],
OW [auth RA],
OX [auth RB],
OY [auth XA],
OZ [auth XA],
PAA [auth XA],
PBA [auth XA],
PCA [auth YA],
PD [auth QA],
PDA [auth YA],
PE [auth QA],
PEA [auth YA],
PF [auth QA],
PFA [auth YA],
PG [auth QH],
PGA [auth YA],
PH [auth RA],
PHA [auth YA],
PI [auth RA],
PIA [auth YA],
PJ [auth RA],
PJA [auth YA],
PK [auth RA],
PKA [auth YA],
PL [auth RA],
PLA [auth YA],
PM [auth RA],
PMA [auth YA],
PN [auth RA],
PNA [auth YA],
PO [auth RA],
POA [auth YA],
PP [auth RA],
PPA [auth YA],
PQ [auth RA],
PQA [auth YA],
PR [auth RA],
PRA [auth YA],
PS [auth RA],
PSA [auth YA],
PT [auth RA],
PTA [auth YF],
PU [auth RA],
PV [auth RA],
PW [auth RA],
PX [auth RB],
PY [auth XA],
PZ [auth XA],
QAA [auth XA],
QBA [auth XA],
QCA [auth YA],
QD [auth QA],
QDA [auth YA],
QE [auth QA],
QEA [auth YA],
QF [auth QA],
QFA [auth YA],
QG [auth QH],
QGA [auth YA],
QH [auth RA],
QHA [auth YA],
QI [auth RA],
QIA [auth YA],
QJ [auth RA],
QJA [auth YA],
QK [auth RA],
QKA [auth YA],
QL [auth RA],
QLA [auth YA],
QM [auth RA],
QMA [auth YA],
QN [auth RA],
QNA [auth YA],
QO [auth RA],
QOA [auth YA],
QP [auth RA],
QPA [auth YA],
QQ [auth RA],
QQA [auth YA],
QR [auth RA],
QRA [auth YA],
QS [auth RA],
QSA [auth YA],
QT [auth RA],
QTA [auth YQ],
QU [auth RA],
QV [auth RA],
QW [auth RA],
QX [auth RB],
QY [auth XA],
QZ [auth XA],
RAA [auth XA],
RBA [auth XA],
RCA [auth YA],
RD [auth QA],
RDA [auth YA],
RE [auth QA],
REA [auth YA],
RF [auth QA],
RFA [auth YA],
RG [auth QL],
RGA [auth YA],
RH [auth RA],
RHA [auth YA],
RI [auth RA],
RIA [auth YA],
RJ [auth RA],
RJA [auth YA],
RK [auth RA],
RKA [auth YA],
RL [auth RA],
RLA [auth YA],
RM [auth RA],
RMA [auth YA],
RN [auth RA],
RNA [auth YA],
RO [auth RA],
ROA [auth YA],
RP [auth RA],
RPA [auth YA],
RQ [auth RA],
RQA [auth YA],
RR [auth RA],
RRA [auth YA],
RS [auth RA],
RSA [auth YA],
RT [auth RA],
RTA [auth YR],
RU [auth RA],
RV [auth RA],
RW [auth RA],
RX [auth RB],
RY [auth XA],
RZ [auth XA],
SAA [auth XA],
SBA [auth XA],
SCA [auth YA],
SD [auth QA],
SDA [auth YA],
SE [auth QA],
SEA [auth YA],
SF [auth QA],
SFA [auth YA],
SGA [auth YA],
SH [auth RA],
SHA [auth YA],
SI [auth RA],
SIA [auth YA],
SJ [auth RA],
SJA [auth YA],
SK [auth RA],
SKA [auth YA],
SL [auth RA],
SLA [auth YA],
SM [auth RA],
SMA [auth YA],
SN [auth RA],
SNA [auth YA],
SO [auth RA],
SOA [auth YA],
SP [auth RA],
SPA [auth YA],
SQ [auth RA],
SQA [auth YA],
SR [auth RA],
SRA [auth YA],
SS [auth RA],
SSA [auth YA],
ST [auth RA],
STA [auth YR],
SU [auth RA],
SV [auth RA],
SW [auth RA],
SX [auth RB],
SY [auth XA],
SZ [auth XA],
TAA [auth XA],
TBA [auth XA],
TCA [auth YA],
TD [auth QA],
TDA [auth YA],
TE [auth QA],
TEA [auth YA],
TF [auth QA],
TFA [auth YA],
TG [auth R0],
TGA [auth YA],
TH [auth RA],
THA [auth YA],
TI [auth RA],
TIA [auth YA],
TJ [auth RA],
TJA [auth YA],
TK [auth RA],
TKA [auth YA],
TL [auth RA],
TLA [auth YA],
TM [auth RA],
TMA [auth YA],
TN [auth RA],
TNA [auth YA],
TO [auth RA],
TOA [auth YA],
TP [auth RA],
TPA [auth YA],
TQ [auth RA],
TQA [auth YA],
TR [auth RA],
TRA [auth YA],
TS [auth RA],
TSA [auth YA],
TT [auth RA],
TTA [auth YU],
TU [auth RA],
TV [auth RA],
TW [auth RA],
TX [auth RB],
TY [auth XA],
TZ [auth XA],
UAA [auth XA],
UBA [auth XA],
UCA [auth YA],
UD [auth QA],
UDA [auth YA],
UE [auth QA],
UEA [auth YA],
UF [auth QA],
UFA [auth YA],
UG [auth R0],
UGA [auth YA],
UH [auth RA],
UHA [auth YA],
UI [auth RA],
UIA [auth YA],
UJ [auth RA],
UJA [auth YA],
UK [auth RA],
UKA [auth YA],
UL [auth RA],
ULA [auth YA],
UM [auth RA],
UMA [auth YA],
UN [auth RA],
UNA [auth YA],
UO [auth RA],
UOA [auth YA],
UP [auth RA],
UPA [auth YA],
UQ [auth RA],
UQA [auth YA],
UR [auth RA],
URA [auth YA],
US [auth RA],
USA [auth YA],
UT [auth RA],
UTA [auth YX],
UU [auth RA],
UV [auth RA],
UW [auth RA],
UX [auth RB],
UY [auth XA],
UZ [auth XA],
VAA [auth XA],
VBA [auth XA],
VCA [auth YA],
VD [auth QA],
VDA [auth YA],
VE [auth QA],
VEA [auth YA],
VF [auth QA],
VFA [auth YA],
VG [auth R1],
VGA [auth YA],
VH [auth RA],
VHA [auth YA],
VI [auth RA],
VIA [auth YA],
VJ [auth RA],
VJA [auth YA],
VK [auth RA],
VKA [auth YA],
VL [auth RA],
VLA [auth YA],
VM [auth RA],
VMA [auth YA],
VN [auth RA],
VNA [auth YA],
VO [auth RA],
VOA [auth YA],
VP [auth RA],
VPA [auth YA],
VQ [auth RA],
VQA [auth YA],
VR [auth RA],
VRA [auth YA],
VS [auth RA],
VSA [auth YA],
VT [auth RA],
VU [auth RA],
VV [auth RA],
VW [auth RA],
VX [auth RB],
VY [auth XA],
VZ [auth XA],
WAA [auth XA],
WCA [auth YA],
WD [auth QA],
WDA [auth YA],
WE [auth QA],
WEA [auth YA],
WF [auth QA],
WFA [auth YA],
WG [auth R3],
WGA [auth YA],
WH [auth RA],
WHA [auth YA],
WI [auth RA],
WIA [auth YA],
WJ [auth RA],
WJA [auth YA],
WK [auth RA],
WKA [auth YA],
WL [auth RA],
WLA [auth YA],
WM [auth RA],
WMA [auth YA],
WN [auth RA],
WNA [auth YA],
WO [auth RA],
WOA [auth YA],
WP [auth RA],
WPA [auth YA],
WQ [auth RA],
WQA [auth YA],
WR [auth RA],
WRA [auth YA],
WS [auth RA],
WSA [auth YA],
WT [auth RA],
WU [auth RA],
WV [auth RA],
WW [auth RA],
WX [auth RB],
WY [auth XA],
WZ [auth XA],
XAA [auth XA],
XBA [auth XE],
XCA [auth YA],
XD [auth QA],
XDA [auth YA],
XE [auth QA],
XEA [auth YA],
XF [auth QA],
XFA [auth YA],
XGA [auth YA],
XH [auth RA],
XHA [auth YA],
XI [auth RA],
XIA [auth YA],
XJ [auth RA],
XJA [auth YA],
XK [auth RA],
XKA [auth YA],
XL [auth RA],
XLA [auth YA],
XM [auth RA],
XMA [auth YA],
XN [auth RA],
XNA [auth YA],
XO [auth RA],
XOA [auth YA],
XP [auth RA],
XPA [auth YA],
XQ [auth RA],
XQA [auth YA],
XR [auth RA],
XRA [auth YA],
XS [auth RA],
XSA [auth YA],
XT [auth RA],
XU [auth RA],
XV [auth RA],
XW [auth RA],
XX [auth RB],
XY [auth XA],
XZ [auth XA],
YAA [auth XA],
YCA [auth YA],
YD [auth QA],
YDA [auth YA],
YE [auth QA],
YEA [auth YA],
YF [auth QA],
YFA [auth YA],
YGA [auth YA],
YH [auth RA],
YHA [auth YA],
YI [auth RA],
YIA [auth YA],
YJ [auth RA],
YJA [auth YA],
YK [auth RA],
YKA [auth YA],
YL [auth RA],
YLA [auth YA],
YM [auth RA],
YMA [auth YA],
YN [auth RA],
YNA [auth YA],
YO [auth RA],
YOA [auth YA],
YP [auth RA],
YPA [auth YA],
YQ [auth RA],
YQA [auth YA],
YR [auth RA],
YRA [auth YA],
YS [auth RA],
YSA [auth YA],
YT [auth RA],
YU [auth RA],
YV [auth RA],
YW [auth RA],
YX [auth RB],
YY [auth XA],
YZ [auth XA],
ZAA [auth XA],
ZBA [auth Y1],
ZCA [auth YA],
ZD [auth QA],
ZDA [auth YA],
ZE [auth QA],
ZEA [auth YA],
ZF [auth QA],
ZFA [auth YA],
ZG [auth R8],
ZGA [auth YA],
ZH [auth RA],
ZHA [auth YA],
ZI [auth RA],
ZIA [auth YA],
ZJ [auth RA],
ZJA [auth YA],
ZK [auth RA],
ZKA [auth YA],
ZL [auth RA],
ZLA [auth YA],
ZM [auth RA],
ZMA [auth YA],
ZN [auth RA],
ZNA [auth YA],
ZO [auth RA],
ZOA [auth YA],
ZP [auth RA],
ZPA [auth YA],
ZQ [auth RA],
ZQA [auth YA],
ZR [auth RA],
ZRA [auth YA],
ZS [auth RA],
ZSA [auth YA],
ZT [auth RA],
ZU [auth RA],
ZV [auth RA],
ZW [auth RA],
ZX [auth RD],
ZY [auth XA],
ZZ [auth XA]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.241 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 210.74α = 90
b = 450.26β = 90
c = 626.11γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PHENIXphasing
Cootmodel building
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM093278
National Science Foundation (NSF, United States)United StatesCHE 1808711

Revision History  (Full details and data files)

  • Version 1.0: 2020-10-14
    Type: Initial release
  • Version 1.1: 2020-10-21
    Changes: Database references
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references, Refinement description