Download MendeleyCrystal structure of a Hydrolase, haloacid dehalogenase-like family from Brucella suis 1330
Abendroth, J., Dranow, D.M., Sankaran, B., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
6NQ4
Crystal structure of a Hydrolase, haloacid dehalogenase-like family from Brucella suis 1330
- PDB DOI: https://doi.org/10.2210/pdb6NQ4/pdb
- Classification: HYDROLASE
- Organism(s): Brucella suis 1330
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2019-01-19 Released: 2019-11-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.183
- R-Value Work: 0.141
- R-Value Observed: 0.142
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HAD superfamily hydrolase | 304 | Brucella suis 1330 | Mutation(s): 0 Gene Names: BS1330_II0196 |  | |
UniProt | |||||
Find proteins for A0A0H3GA96 (Brucella suis biovar 1 (strain 1330)) Explore A0A0H3GA96 Go to UniProtKB: A0A0H3GA96 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3GA96 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | G [auth A], K [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| EDO Query on EDO | C [auth A] D [auth A] E [auth A] F [auth A] I [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| NA Query on NA | H [auth A], L [auth B], M [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.183
- R-Value Work: 0.141
- R-Value Observed: 0.142
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 122.43 | α = 90 |
| b = 60.12 | β = 104.28 |
| c = 86.84 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| Arcimboldo | phasing |
| ARP/wARP | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2019-11-27 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2019-11-27
Type: Initial release - Version 1.1: 2024-03-13
Changes: Data collection, Database references, Derived calculations - Version 1.2: 2024-04-03
Changes: Refinement description
