Download MendeleyCrystal structure of a Methionine aminopeptidase MetAP from Acinetobacter baumannii
Edwards, T.E., Mayclin, S.J., Lorimer, D.D., Horanyi, P.S., Seattle Structural Genomics Center for Infectious DiseaseTo be published.
6MRF
Crystal structure of a Methionine aminopeptidase MetAP from Acinetobacter baumannii
- PDB DOI: https://doi.org/10.2210/pdb6MRF/pdb
- Classification: HYDROLASE
- Organism(s): Acinetobacter baumannii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-10-12 Released: 2018-10-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.217
- R-Value Work: 0.168
- R-Value Observed: 0.170
wwPDB Validation 3D Report Full Report
Currently 6MRF does not have a validation slider image.
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Methionine aminopeptidase | 270 | Acinetobacter baumannii | Mutation(s): 0 Gene Names: map_1, map, map1, map_2, A7M79_08180, A7M90_04815, A7N09_12540, ABUW_1234, APD06_11055, AZE33_14285... EC: 3.4.11.18 |  | |
UniProt | |||||
Find proteins for V5VCW7 (Acinetobacter baumannii) Explore V5VCW7 Go to UniProtKB: V5VCW7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | V5VCW7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A], C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.217
- R-Value Work: 0.168
- R-Value Observed: 0.170
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.77 | α = 90 |
| b = 53.69 | β = 90 |
| c = 84.27 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Structure Validation
Currently 6MRF does not have a validation slider image.
Entry History
Deposition Data
- Released Date: 2018-10-31 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2018-10-31
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description
