6LWT

Crystal structure of Staphylococcal Superantigen-Like protein 10

PDB DOI: https://doi.org/10.2210/pdb6LWT/pdb

Classification: IMMUNE SYSTEM
Organism(s): Staphylococcus aureus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-02-08 Released: 2021-02-10
Deposition Author(s): Nan, J., Chengliang, W., Tianrong, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.246
R-Value Work: 0.209
R-Value Observed: 0.211

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Staphylococcal Superantigen-Like protein 10

Nan, J., Chengliang, W., Tianrong, H.

To be published.

Macromolecule Content

Total Structure Weight: 48.93 kDa
Atom Count: 3,184
Modelled Residue Count: 377
Deposited Residue Count: 416
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Superantigen-like protein SSL10	A, B	208	Staphylococcus aureus	Mutation(s): 0 Gene Names: E5491_02145, FAF10_06335, FAF13_10025, FAF15_01065, FAF17_11070
UniProt
Find proteins for Q2G2X7 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2G2X7 Go to UniProtKB: Q2G2X7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q2G2X7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.246
R-Value Work: 0.209
R-Value Observed: 0.211
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.243	α = 90
b = 71.211	β = 90
c = 140.657	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2021-02-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2021-02-10
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.