6LA4

Cryo-EM structure of full echovirus 11 particle at pH 5.5


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Molecular and structural basis of Echovirus 11 infection by using the dual-receptor system of CD55 and FcRn.

Niu, S.Liu, C.Liu, C.Liu, S.Song, Y.Zhang, Y.Tian, W.Zhao, X.Wang, P.Gao, F.G.

(2020) Chin Sci Bull 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP1285Echovirus E11Mutation(s): 0 
UniProt
Find proteins for Q2LJ73 (Echovirus E11)
Explore Q2LJ73 
Go to UniProtKB:  Q2LJ73
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2LJ73
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP2251Echovirus E11Mutation(s): 0 
UniProt
Find proteins for A0A0R5YS56 (Echovirus E11)
Explore A0A0R5YS56 
Go to UniProtKB:  A0A0R5YS56
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0R5YS56
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP3238Echovirus E11Mutation(s): 0 
UniProt
Find proteins for A0A346I7K2 (Echovirus E11)
Explore A0A346I7K2 
Go to UniProtKB:  A0A346I7K2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A346I7K2
Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP469Echovirus E11Mutation(s): 0 
UniProt
Find proteins for E0WN77 (Echovirus E11)
Explore E0WN77 
Go to UniProtKB:  E0WN77
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE0WN77
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SPH (Subject of Investigation/LOI)
Query on SPH

Download Ideal Coordinates CCD File 
E [auth A]SPHINGOSINE
C18 H37 N O2
WWUZIQQURGPMPG-MSOLQXFVSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-10-07
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references, Derived calculations