Download MendeleyComplex assembly, crystallization and preliminary X-ray crystallographic analysis of the duck pAnpl-UAA
Liu, Z.X., Zhang, N.Z.To be published.
6KYU
Complex assembly, crystallization and preliminary X-ray crystallographic studies of duck MHC class I molecule
- PDB DOI: https://doi.org/10.2210/pdb6KYU/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Anas platyrhynchos, Duck Tembusu virus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-09-20 Released: 2020-09-23
- Funding Organization(s): National Basic Research Program of China (973 Program)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.188
- R-Value Work: 0.166
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| MHC class I antigen | 271 | Anas platyrhynchos | Mutation(s): 0 Gene Names: Apnl-UAA*B4 |  | |
UniProt | |||||
Find proteins for A0A2Z4U0R6 (Anas platyrhynchos) Explore A0A2Z4U0R6 Go to UniProtKB: A0A2Z4U0R6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A2Z4U0R6 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-2-microglobulin | 101 | Anas platyrhynchos | Mutation(s): 0 Gene Names: b2m |  | |
UniProt | |||||
Find proteins for U3I3I3 (Anas platyrhynchos platyrhynchos) Explore U3I3I3 Go to UniProtKB: U3I3I3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | U3I3I3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| peptide | 9 | Duck Tembusu virus | Mutation(s): 0 |  | |
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.188
- R-Value Work: 0.166
- Space Group: P 62
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 82.468 | α = 90 |
| b = 82.468 | β = 90 |
| c = 112.507 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-09-23 Deposition Author(s): Liu, Z.X., Zhang, L., Zhang, N.Z.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Basic Research Program of China (973 Program) | China | 2016YFD0500106 |
Revision History (Full details and data files)
- Version 1.0: 2020-09-23
Type: Initial release - Version 1.1: 2020-12-30
Changes: Source and taxonomy
