Download MendeleyCrystal structure of E136F mutant of Xanthine-guanine phosphoribosyltransferase from Yersinia pestis
Lankipalli, S., Ramagopal, U.A.To be published.
6KQC
Crystal structure of E136F mutant of Xanthine-guanine phosphoribosyltransferase from Yersinia pestis
- PDB DOI: https://doi.org/10.2210/pdb6KQC/pdb
- Classification: TRANSFERASE
- Organism(s): Yersinia pestis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2019-08-16 Released: 2019-09-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.212
- R-Value Work: 0.180
- R-Value Observed: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Xanthine phosphoribosyltransferase | 153 | Yersinia pestis | Mutation(s): 1 Gene Names: gpt, YPO3225, y0963, YP_0708 EC: 2.4.2.22 |  | |
UniProt | |||||
Find proteins for Q8ZC05 (Yersinia pestis) Explore Q8ZC05 Go to UniProtKB: Q8ZC05 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ZC05 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | F [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A], D [auth B], E [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.212
- R-Value Work: 0.180
- R-Value Observed: 0.182
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.38 | α = 90 |
| b = 96.65 | β = 90 |
| c = 51.029 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2019-09-11 Deposition Author(s): Lankipalli, S., Ramagopal, U.A.
Revision History (Full details and data files)
- Version 1.0: 2019-09-11
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
