Download MendeleyCrystal structure of DNA polymerase III subunit beta from Rickettsia rickettsii
Conrady, D.G., Dranow, D.M., Lorimer, D.D., Edwards, T.E.To be published.
6DLK
Crystal structure of DNA polymerase III subunit beta from Rickettsia rickettsii
- PDB DOI: https://doi.org/10.2210/pdb6DLK/pdb
- Classification: TRANSFERASE
- Organism(s): Rickettsia rickettsii str. 'Sheila Smith
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-06-01 Released: 2018-10-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.212
- R-Value Work: 0.167
- R-Value Observed: 0.168
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta sliding clamp | 387 | Rickettsia rickettsii str. 'Sheila Smith | Mutation(s): 0 Gene Names: A1G_03290 |  | |
UniProt | |||||
Find proteins for A0A0H3AWV3 (Rickettsia rickettsii (strain Sheila Smith)) Explore A0A0H3AWV3 Go to UniProtKB: A0A0H3AWV3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3AWV3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | C [auth A], D [auth B], E [auth B], F [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.212
- R-Value Work: 0.167
- R-Value Observed: 0.168
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/m36dlk
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.09 | α = 90 |
| b = 97.57 | β = 90 |
| c = 115.83 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| MoRDa | phasing |
Entry History
Deposition Data
- Released Date: 2018-10-03 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2018-10-03
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Refinement description
