6BKV

Crystal structure of Thioredoxin from Helicobacter pylori (strain G27)

PDB DOI: https://doi.org/10.2210/pdb6BKV/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Helicobacter pylori
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-11-09 Released: 2017-12-06
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.202
R-Value Work: 0.175
R-Value Observed: 0.178

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Thioredoxin from Helicobacter pylori (strain G27)

Abendroth, J., Dranow, D.M., Lorimer, D.D., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 25.8 kDa
Atom Count: 1,697
Modelled Residue Count: 218
Deposited Residue Count: 228
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioredoxin	A, B	114	Helicobacter pylori	Mutation(s): 0 Gene Names: BV499_05595, BZK25_01255, BZK28_00485, HPY207_04265
UniProt
Find proteins for P66928 (Helicobacter pylori (strain ATCC 700392 / 26695)) Explore P66928 Go to UniProtKB: P66928
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P66928
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.202
R-Value Work: 0.175
R-Value Observed: 0.178
Space Group: P 3₂ 2 1
Diffraction Data: https://doi.org/10.18430/M36BKV

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 93.16	α = 90
b = 93.16	β = 90
c = 78.05	γ = 120

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
MoRDa	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-12-06

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2017-12-06
Type: Initial release
Version 1.1: 2024-04-03
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.