Download MendeleyX-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
Fujishiro, T., Nakamura, R., Takahashi, Y.To be published.
5ZSQ
NifS from Hydrogenimonas thermophila, soaked with L-cysteine for 4 min
- PDB DOI: https://doi.org/10.2210/pdb5ZSQ/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Hydrogenimonas thermophila
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-04-29 Released: 2019-05-01
- Funding Organization(s): Japan Society for the Promotion of Science
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.21 Å
- R-Value Free: 0.245
- R-Value Work: 0.197
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cysteine desulfurase | 415 | Hydrogenimonas thermophila | Mutation(s): 0 Gene Names: SAMN05216234_11013 |  | |
UniProt | |||||
Find proteins for A0A1I5NEH3 (Hydrogenimonas thermophila) Explore A0A1I5NEH3 Go to UniProtKB: A0A1I5NEH3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A1I5NEH3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| LLP Query on LLP | A, B | L-PEPTIDE LINKING | C14 H22 N3 O7 P |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.21 Å
- R-Value Free: 0.245
- R-Value Work: 0.197
- R-Value Observed: 0.200
- Space Group: P 65
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 137.5 | α = 90 |
| b = 137.5 | β = 90 |
| c = 98.7 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-05-01 Deposition Author(s): Nakamura, R., Fujishiro, T., Takahashi, Y.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Japan Society for the Promotion of Science | Japan | 17K14510 |
| Japan Society for the Promotion of Science | Japan | 15H04472 |
Revision History (Full details and data files)
- Version 1.0: 2019-05-01
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
