5ZOV

Inward-facing conformation of L-ascorbate transporter UlaA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.33 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.273 
  • R-Value Observed: 0.275 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Inward-facing conformation of l-ascorbate transporter suggests an elevator mechanism

Luo, P.Dai, S.Zeng, J.Duan, J.Shi, H.Wang, J.

(2018) Cell Discov 4: 35-35

  • DOI: https://doi.org/10.1038/s41421-018-0037-y
  • Primary Citation of Related Structures:  
    5ZOV

  • PubMed Abstract: 

    Various bacteria can ferment vitamin C (l-ascorbate) under anaerobic conditions via the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS asc system is composed of two soluble energy-coupling proteins (EI and HPr) and an enzyme II complex (EIIA, EIIB, and EIIC) for the anaerobic uptake of ascorbate and its phosphorylation to l-ascorbate 6-phosphate in vivo. Crystal structures of the ascorbate-bound EIIC component from Escherichia coli are available in outward-open and occluded conformations, suggesting a possible elevator mechanism of membrane transport. Despite these advances, it remains unclear how EIIC actually transports the substrate across the membrane and interacts with EIIB, which transfers its phosphate group to the EIIC-embedding ascorbate. Here, we present the crystal structure of the EIIC asc component from Pasteurella multocida in the inward-facing conformation. By comparing three conformational states, we confirmed the original proposed model: the ascorbate translocation can be achieved by a rigid-body movement of the substrate-binding core domain relative to the V motif domain, which brings along the transmembrane helices TM2 and TM7 of the V motif domain to undergo a winding at the pivotal positions. Together with an in vivo transport assay, we completed the picture of the transport cycle of the ascorbate superfamily of membrane-spanning EIIC components of the PTS system.


  • Organizational Affiliation

    State Key Laboratory of Membrane Biology, Beijing Advanced Innovation Center for Structural Biology, School of Life Sciences, Tsinghua University, 100084 Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PTS ascorbate-specific subunit IIBC
A, B
465Pasteurella multocidaMutation(s): 0 
Gene Names: AZI96_02610
Membrane Entity: Yes 
UniProt
Find proteins for Q9CMQ1 (Pasteurella multocida (strain Pm70))
Explore Q9CMQ1 
Go to UniProtKB:  Q9CMQ1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9CMQ1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.33 Å
  • R-Value Free: 0.317 
  • R-Value Work: 0.273 
  • R-Value Observed: 0.275 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 107.336α = 90
b = 107.336β = 90
c = 113.288γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2018-08-01 
  • Deposition Author(s): Wang, J.W.

Funding OrganizationLocationGrant Number
Ministry of Science and Technology (China)China2015CB910104
Ministry of Science and Technology (China)China2016YFA0501103
National Natural Science Foundation of ChinaChina31621092

Revision History  (Full details and data files)

  • Version 1.0: 2018-08-01
    Type: Initial release
  • Version 1.1: 2018-09-19
    Changes: Data collection, Database references
  • Version 1.2: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations
  • Version 1.3: 2023-11-22
    Changes: Data collection, Database references, Refinement description, Structure summary