Download MendeleyThe structure of a chitin deacetylase from Bombyx mori provide the first insight into insect chitin deacetylation mechanism
Liu, L., Zhou, Y., Yang, Q.To be published.
5Z34
The structure of a chitin deacetylase from Bombyx mori provide the first insight into insect chitin deacetylation mechanism
- PDB DOI: https://doi.org/10.2210/pdb5Z34/pdb
- Classification: HYDROLASE
- Organism(s): Bombyx mori
- Expression System: Komagataella phaffii GS115
- Mutation(s): No
- Deposited: 2018-01-05 Released: 2019-02-20
- Funding Organization(s): National Natural Science Funds for Distinguished Young Scholar
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.191
- R-Value Work: 0.175
- R-Value Observed: 0.176
wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Chitin deacetylase | 369 | Bombyx mori | Mutation(s): 0 EC: 3.5.1.41 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.191
- R-Value Work: 0.175
- R-Value Observed: 0.176
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 115.017 | α = 90 |
| b = 115.017 | β = 90 |
| c = 106.51 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data scaling |
| PHENIX | phasing |
| Coot | model building |
| HKL-3000 | data reduction |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Funds for Distinguished Young Scholar | China | 31425021 |
Revision History (Full details and data files)
- Version 1.0: 2019-02-20
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary
